Diffusion SpecMiCP / ReactMiCP (bin/unsaturated) History

History
bin/unsaturatedf50a198281ba499ccf53f21…

Oct 5 2015

toolchain: add basic docker image file
f50a198281ba
·fabien on Oct 5 2015, 01:42.

Oct 3 2015

fast: optimize debye-huckel law
386ce7bfa07c
·fabien on Oct 3 2015, 17:28.
add new micro-benchmark for AdimensionalSystem
3c9f0260c8cc
·fabien on Oct 3 2015, 05:14.
fix: fix FindBenchmark.cmake
cfc694b29259
·fabien on Oct 3 2015, 05:14.

Oct 1 2015

Merge branch 'benchmark'
534fab73249d
·fabien on Oct 1 2015, 04:55.
toolchain: micro-benchmark for database container
e7c0f3e0f2c8
·fabien on Oct 1 2015, 04:50.
toolchain: add support for micro-benchmarking
82b1f62aeb2a
·fabien on Oct 1 2015, 04:50.

Sep 29 2015

Merge branch 'specmicp/adim_refactor'
f71e6ee12d35
·fabien on Sep 29 2015, 18:08.
refactor: separe residual water in 2 functions
8eea5f44bc3c
·fabien on Sep 29 2015, 18:08.
fix: re-compute gas scaling factor
bc2979556f46
·fabien on Sep 29 2015, 18:08.
refactor: rename saturation_ -> volume_fraction_ in AdimensionalSystem
fcd797321b23
·fabien on Sep 29 2015, 18:08.
Merge branch 'specmicp/cappressure'
7da7c3430d33
·fabien on Sep 29 2015, 16:20.
refactor: remove AdimensionalSystem header inclusion in solver
4e562635f94b
·fabien on Sep 29 2015, 16:16.
fix: correct functions for volume fraction gas
4f8c2e8a5fc2
·fabien on Sep 29 2015, 16:16.
feature: add water pressure model in specmicp
4bb92b2d2b3f
·fabien on Sep 29 2015, 16:16.

Sep 26 2015

impr: padding in adimensional_system_solution
e1d44a9d9d81
·fabien on Sep 26 2015, 23:53.

Sep 14 2015

refactor: hide default options of AdimensinalSystemOptions
24ef8eadfa0f
·fabien on Sep 14 2015, 23:30.
refactor: adim default options are now in config_*.h file
f0fd4a5cd0ff
·fabien on Sep 14 2015, 23:04.
refactor: move configuration solution output in config_<> file
8f3676bf7899
·fabien on Sep 14 2015, 22:11.
output: add comment in solution files of SpecMiCP
3fe35fdcbd16
·fabien on Sep 14 2015, 21:55.
test: add test for specmicp library
0d462a7bb38b
·fabien on Sep 14 2015, 15:32.
test: move cmake rules for specmicp test
386114bd5e55
·fabien on Sep 14 2015, 15:13.

Sep 9 2015

fix: print the simplified db in specmicp output
7465729f8739
·fabien on Sep 9 2015, 21:37.
fix: correct initialisation of variables in AdimensionalSolver
390c23c8aaee
·fabien on Sep 9 2015, 21:35.
fix: correct parsing of a fix fugacity constraint
e8d5bb01032b
·fabien on Sep 9 2015, 21:34.
database: add more compounds in cemdata
a0d21846cfdb
·fabien on Sep 9 2015, 21:33.

Aug 11 2015

impr: abort solution parsing if metadata are not correct
db7f20a8c8a1
·fabien on Aug 11 2015, 20:55.
cosmetic: remove old code in comment
f75db11b41df
·fabien on Aug 11 2015, 20:54.
cosmetic: remove comments that show up in the TODO list
b9dca64bf78b
·fabien on Aug 11 2015, 20:53.
impr: refactor the clean_label function
51f3d18104e9
·fabien on Aug 11 2015, 20:21.
impr: use pimpl idiom in transprot stagger
87008f18555b
·fabien on Aug 11 2015, 18:16.
test-fix: micpsolver tests must links to the common lib
33abd27298dd
·fabien on Aug 11 2015, 16:59.
impr: flag to use chemistry rate in residual computation
f55d9b72639e
·fabien on Aug 11 2015, 16:49.

Jul 20 2015

fix: logging should now works,
923b00e74e4f
·fabien on Jul 20 2015, 23:01.
fix: correct assertions in adimensional system numbering
1c251fa879ac
·fabien on Jul 20 2015, 23:00.

Jul 17 2015

fix: Correct saturation index sum
5d8f161fb9ba
·fabien on Jul 17 2015, 19:34.
feat: print saturation index in reactmicp output
d8ef5759bebd
·fabien on Jul 17 2015, 16:41.

Jul 16 2015

refactor: add a header file to configure database
f41535e29c7c
·fabien on Jul 16 2015, 20:44.

Jul 15 2015

refactor: reactmicp::io::OutputNodalVariables
79ea7fb9bd4c
·fabien on Jul 15 2015, 23:41.
feat: add assert macro to check bounds of species in database
7689fcf7d1fd
·fabien on Jul 15 2015, 23:40.

Jul 13 2015

fix: modificator.set_minerals_kinetic
cee2d2898673
·fabien on Jul 13 2015, 20:56.
unit api : improve -> pressure converter
5a5d1f0d9096
·branch: specmicp_bin
·fabien on Jul 13 2015, 18:10.
database api : improve
dfe1eaf99c56
·fabien on Jul 13 2015, 18:08.

Jun 29 2015

impr: add a base class for a class containing the database
454602ca96d0
·fabien on Jun 29 2015, 23:10.
impr: add functions to find class and properties of aqueous/solid phases
3ed7f43ef718
·fabien on Jun 29 2015, 23:06.
impr: Add errors for every species if label is invalid
8bbfbc127ea9
·fabien on Jun 29 2015, 22:59.
impr: add numerical information about the scalar_t type
a9ac384357e6
·fabien on Jun 29 2015, 22:54.

Jun 25 2015

Add a specmicp binary
a6a6c68c7250
·fabien on Jun 25 2015, 23:23.
Install SpecMiCP library
829fead4677c
·fabien on Jun 25 2015, 23:21.
refact: csv_formatter use the FormatInformation class
113dcc715445
·fabien on Jun 25 2015, 22:53.
fix: fix warning du to signed/unsigned comparison
668f776a2727
·fabien on Jun 25 2015, 22:50.
feat: add database checking option in specmicp binary
321d2e2ffc8c
·fabien on Jun 25 2015, 19:50.
Merge branch 'specmicp_bin' of bitbucket.org:specmicp/specmicp into specmicp_bin
5274b7d73936
·fabien on Jun 25 2015, 19:25.
Update test input file of specmicp
866f117c00f6
·fabien on Jun 25 2015, 19:24.
feature: Add specmicp binary
716c76a4f13f
·fabien on Jun 25 2015, 19:24.
Use the new format class info in output.
7d9e3901a22c
·fabien on Jun 25 2015, 19:24.
Configure the YAML emitter using the format class.
f42e076c0b54
·fabien on Jun 25 2015, 19:24.
Add formatter information
6f5079157492
·fabien on Jun 25 2015, 19:24.
Merge branch 'database'
2cfa6e07e379
·fabien on Jun 25 2015, 19:11.
fix: remove output when checking equation
e531335c0c1f
·branch: database
·fabien on Jun 25 2015, 19:10.
databases: add solid phase formula in cemdata
caec039a6266
·fabien on Jun 25 2015, 18:59.
feat: check formula/equation for compounds, gas and solid phases
d006aa1ac9f9
·fabien on Jun 25 2015, 18:59.

Jun 24 2015

Do not check composition of benchmark data
689c7b7e0ccd
·fabien on Jun 24 2015, 22:47.
feat: Check composition (break ABI)
036ce82ebfe8
·fabien on Jun 24 2015, 22:44.
Label parser for the element composition
b9da1cfa8545
·fabien on Jun 24 2015, 22:37.

Jun 23 2015

Use the new format class info in output.
8dcafafa6cd7
·fabien on Jun 23 2015, 19:52.
Configure the YAML emitter using the format class.
9c1d4edfaeb5
·fabien on Jun 23 2015, 19:42.
Add formatter information
20d72e7ca89b
·fabien on Jun 23 2015, 19:38.

Jun 22 2015

update tests
7719728b0c10
·fabien on Jun 22 2015, 21:06.
Modify signature of AdimensionalSystemSolver constructors
1212aabdfff4
·fabien on Jun 22 2015, 20:58.
Remove print statement
84f2ee511d2e
·fabien on Jun 22 2015, 20:55.
Add a function to print the constraints
0a4a5f442443
·fabien on Jun 22 2015, 20:30.
Add an option to remove half-cell reaction in configuration
08252559070d
·fabien on Jun 22 2015, 20:27.
Fix bug in SpecMiCP configuration
a01084ae1afa
·fabien on Jun 22 2015, 20:26.

Jun 19 2015

Do not remove H[+]/HO[-] when dissolving system
28fbffc41fa8
·fabien on Jun 19 2015, 23:06.

Jun 18 2015

Merge branch 'master' of bitbucket.org:specmicp/specmicp
73f15c1a0b51
·fabien on Jun 18 2015, 16:18.
Add tests for condition number estimations
e9990c0c136f
·fabien on Jun 18 2015, 16:13.

Jun 12 2015

Transform the cemdata database to YAML formatting
56cb58fdb924
·fabien on Jun 12 2015, 20:35.
Fix report of wrong label for the composition in the database
3867cdd1bfe7
·fabien on Jun 12 2015, 20:29.
Add option to remove all half-cells reactions
f3e5ca061b88
·fabien on Jun 12 2015, 20:28.

Jun 10 2015

Add library directories for yaml
a4c639058982
·georget on Jun 10 2015, 19:55.
Add more tests for the database module
ec8c87bf41c2
·fabien on Jun 10 2015, 16:22.
Correct includes in io files
7fee7928fda3
·fabien on Jun 10 2015, 16:21.
Fix, minor improvements in SpecMiCP module
1d81493e610c
·fabien on Jun 10 2015, 16:20.
Fixes in the database module
54c13dbb2616
·fabien on Jun 10 2015, 16:17.
Correct include directories in FindSpecMiCP module
5c12af45fc6a
·fabien on Jun 10 2015, 16:15.

Jun 9 2015

Documentation
f9d6ee556023
·fabien on Jun 9 2015, 14:44.
Update requirements in INSTALL
393bfca29057
·fabien on Jun 9 2015, 05:56.
Remove jsoncpp from the tree
e398b85a0be5
·fabien on Jun 9 2015, 05:54.
Move AdimensionalSystemSolverSaver to YAML formatting
f28c1c458a8b
·fabien on Jun 9 2015, 05:53.
Update YAML module
e8dc7ec357c5
·fabien on Jun 9 2015, 05:52.
The database writer is now using the yaml api
eb6ac2b2a0e3
·fabien on Jun 9 2015, 00:14.

Jun 8 2015

Update exemples and test to the databases
eb284a0c4989
·fabien on Jun 8 2015, 19:47.
Remove old databases, and rename the others to ".yaml"
cd749eaa8f1c
·fabien on Jun 8 2015, 19:47.
Add a YAML reader for the database
3bce4fde6bb4
·fabien on Jun 8 2015, 19:45.
Update configurations to use the new updates in YAML module
35f1ce4a8720
·fabien on Jun 8 2015, 19:44.
Update YAML module
2f3742d01773
·fabien on Jun 8 2015, 19:41.

Jun 6 2015

Add tests for database
f1fb94c13d90
·fabien on Jun 6 2015, 20:23.
Correct bug in the database writer
f7dce508a58b
·fabien on Jun 6 2015, 20:02.
Add a list of element list in the database
1300961d6545
·fabien on Jun 6 2015, 20:02.

Historybin/unsaturatedf50a198281ba499ccf53f21…

Oct 5 2015

Oct 3 2015

Oct 1 2015

Sep 29 2015

Sep 26 2015

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Jul 20 2015

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Jun 29 2015

Jun 25 2015

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Jun 10 2015

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Jun 8 2015

Jun 6 2015

History
bin/unsaturatedf50a198281ba499ccf53f21…