Diffusion SpecMiCP / ReactMiCP (master) History

History
master9de2802aad381a81e58f571…

Oct 14 2015

Aqueous liquid transport equation (unsaturated)
9de2802aad38
·fabien on Oct 14 2015, 22:03.
Gas diffusion equation (unsaturated)
0faef04ff3bc
·fabien on Oct 14 2015, 22:03.
Saturation Equation (unsaturated)
e96f9ec8af07
·fabien on Oct 14 2015, 22:03.
TransportConstraints : constraints for transport equations
9f400fef0c2a
·fabien on Oct 14 2015, 22:03.
Variables for the unsaturated reactive transport system
4e3d1dd452a3
·fabien on Oct 14 2015, 22:03.
associate numbers with StaggerReturnCode for quick debugguing
a7c86055496b
·fabien on Oct 14 2015, 22:03.
add water viscosity as constants
982e05359269
·fabien on Oct 14 2015, 22:03.
add helper function to check failure of parabolic solver
4f607141ce7f
·fabien on Oct 14 2015, 22:03.
fix: header guard for src/utils/compat.hpp
d577c5f2a2cb
·fabien on Oct 14 2015, 22:03.

Oct 5 2015

test: add tests for physics/laws.hpp
4119d04a2010
·fabien on Oct 5 2015, 19:18.
fix: fix debye-huckel law and tests
284828328b97
·fabien on Oct 5 2015, 04:36.
toolchain: add basic docker image file
f50a198281ba
·fabien on Oct 5 2015, 01:42.

Oct 3 2015

fast: optimize debye-huckel law
386ce7bfa07c
·fabien on Oct 3 2015, 17:28.
add new micro-benchmark for AdimensionalSystem
3c9f0260c8cc
·fabien on Oct 3 2015, 05:14.
fix: fix FindBenchmark.cmake
cfc694b29259
·fabien on Oct 3 2015, 05:14.

Oct 1 2015

Merge branch 'benchmark'
534fab73249d
·fabien on Oct 1 2015, 04:55.
toolchain: micro-benchmark for database container
e7c0f3e0f2c8
·fabien on Oct 1 2015, 04:50.
toolchain: add support for micro-benchmarking
82b1f62aeb2a
·fabien on Oct 1 2015, 04:50.

Sep 29 2015

Merge branch 'specmicp/adim_refactor'
f71e6ee12d35
·fabien on Sep 29 2015, 18:08.
refactor: separe residual water in 2 functions
8eea5f44bc3c
·fabien on Sep 29 2015, 18:08.
fix: re-compute gas scaling factor
bc2979556f46
·fabien on Sep 29 2015, 18:08.
refactor: rename saturation_ -> volume_fraction_ in AdimensionalSystem
fcd797321b23
·fabien on Sep 29 2015, 18:08.
Merge branch 'specmicp/cappressure'
7da7c3430d33
·fabien on Sep 29 2015, 16:20.
refactor: remove AdimensionalSystem header inclusion in solver
4e562635f94b
·fabien on Sep 29 2015, 16:16.
fix: correct functions for volume fraction gas
4f8c2e8a5fc2
·fabien on Sep 29 2015, 16:16.
feature: add water pressure model in specmicp
4bb92b2d2b3f
·fabien on Sep 29 2015, 16:16.

Sep 26 2015

impr: padding in adimensional_system_solution
e1d44a9d9d81
·fabien on Sep 26 2015, 23:53.

Sep 14 2015

refactor: hide default options of AdimensinalSystemOptions
24ef8eadfa0f
·fabien on Sep 14 2015, 23:30.
refactor: adim default options are now in config_*.h file
f0fd4a5cd0ff
·fabien on Sep 14 2015, 23:04.
refactor: move configuration solution output in config_<> file
8f3676bf7899
·fabien on Sep 14 2015, 22:11.
output: add comment in solution files of SpecMiCP
3fe35fdcbd16
·fabien on Sep 14 2015, 21:55.
test: add test for specmicp library
0d462a7bb38b
·fabien on Sep 14 2015, 15:32.
test: move cmake rules for specmicp test
386114bd5e55
·fabien on Sep 14 2015, 15:13.

Sep 9 2015

fix: print the simplified db in specmicp output
7465729f8739
·fabien on Sep 9 2015, 21:37.
fix: correct initialisation of variables in AdimensionalSolver
390c23c8aaee
·fabien on Sep 9 2015, 21:35.
fix: correct parsing of a fix fugacity constraint
e8d5bb01032b
·fabien on Sep 9 2015, 21:34.
database: add more compounds in cemdata
a0d21846cfdb
·fabien on Sep 9 2015, 21:33.

Aug 11 2015

impr: abort solution parsing if metadata are not correct
db7f20a8c8a1
·fabien on Aug 11 2015, 20:55.
cosmetic: remove old code in comment
f75db11b41df
·fabien on Aug 11 2015, 20:54.
cosmetic: remove comments that show up in the TODO list
b9dca64bf78b
·fabien on Aug 11 2015, 20:53.
impr: refactor the clean_label function
51f3d18104e9
·fabien on Aug 11 2015, 20:21.
impr: use pimpl idiom in transprot stagger
87008f18555b
·fabien on Aug 11 2015, 18:16.
test-fix: micpsolver tests must links to the common lib
33abd27298dd
·fabien on Aug 11 2015, 16:59.
impr: flag to use chemistry rate in residual computation
f55d9b72639e
·fabien on Aug 11 2015, 16:49.

Jul 20 2015

fix: logging should now works,
923b00e74e4f
·fabien on Jul 20 2015, 23:01.
fix: correct assertions in adimensional system numbering
1c251fa879ac
·fabien on Jul 20 2015, 23:00.

Jul 17 2015

fix: Correct saturation index sum
5d8f161fb9ba
·fabien on Jul 17 2015, 19:34.
feat: print saturation index in reactmicp output
d8ef5759bebd
·fabien on Jul 17 2015, 16:41.

Jul 16 2015

refactor: add a header file to configure database
f41535e29c7c
·fabien on Jul 16 2015, 20:44.

Jul 15 2015

refactor: reactmicp::io::OutputNodalVariables
79ea7fb9bd4c
·fabien on Jul 15 2015, 23:41.
feat: add assert macro to check bounds of species in database
7689fcf7d1fd
·fabien on Jul 15 2015, 23:40.

Jul 13 2015

fix: modificator.set_minerals_kinetic
cee2d2898673
·fabien on Jul 13 2015, 20:56.
unit api : improve -> pressure converter
5a5d1f0d9096
·branch: specmicp_bin
·fabien on Jul 13 2015, 18:10.
database api : improve
dfe1eaf99c56
·fabien on Jul 13 2015, 18:08.

Jun 29 2015

impr: add a base class for a class containing the database
454602ca96d0
·fabien on Jun 29 2015, 23:10.
impr: add functions to find class and properties of aqueous/solid phases
3ed7f43ef718
·fabien on Jun 29 2015, 23:06.
impr: Add errors for every species if label is invalid
8bbfbc127ea9
·fabien on Jun 29 2015, 22:59.
impr: add numerical information about the scalar_t type
a9ac384357e6
·fabien on Jun 29 2015, 22:54.

Jun 25 2015

Add a specmicp binary
a6a6c68c7250
·fabien on Jun 25 2015, 23:23.
Install SpecMiCP library
829fead4677c
·fabien on Jun 25 2015, 23:21.
refact: csv_formatter use the FormatInformation class
113dcc715445
·fabien on Jun 25 2015, 22:53.
fix: fix warning du to signed/unsigned comparison
668f776a2727
·fabien on Jun 25 2015, 22:50.
feat: add database checking option in specmicp binary
321d2e2ffc8c
·fabien on Jun 25 2015, 19:50.
Merge branch 'specmicp_bin' of bitbucket.org:specmicp/specmicp into specmicp_bin
5274b7d73936
·fabien on Jun 25 2015, 19:25.
Update test input file of specmicp
866f117c00f6
·fabien on Jun 25 2015, 19:24.
feature: Add specmicp binary
716c76a4f13f
·fabien on Jun 25 2015, 19:24.
Use the new format class info in output.
7d9e3901a22c
·fabien on Jun 25 2015, 19:24.
Configure the YAML emitter using the format class.
f42e076c0b54
·fabien on Jun 25 2015, 19:24.
Add formatter information
6f5079157492
·fabien on Jun 25 2015, 19:24.
Merge branch 'database'
2cfa6e07e379
·fabien on Jun 25 2015, 19:11.
fix: remove output when checking equation
e531335c0c1f
·branch: database
·fabien on Jun 25 2015, 19:10.
databases: add solid phase formula in cemdata
caec039a6266
·fabien on Jun 25 2015, 18:59.
feat: check formula/equation for compounds, gas and solid phases
d006aa1ac9f9
·fabien on Jun 25 2015, 18:59.

Jun 24 2015

Do not check composition of benchmark data
689c7b7e0ccd
·fabien on Jun 24 2015, 22:47.
feat: Check composition (break ABI)
036ce82ebfe8
·fabien on Jun 24 2015, 22:44.
Label parser for the element composition
b9da1cfa8545
·fabien on Jun 24 2015, 22:37.

Jun 23 2015

Use the new format class info in output.
8dcafafa6cd7
·fabien on Jun 23 2015, 19:52.
Configure the YAML emitter using the format class.
9c1d4edfaeb5
·fabien on Jun 23 2015, 19:42.
Add formatter information
20d72e7ca89b
·fabien on Jun 23 2015, 19:38.

Jun 22 2015

update tests
7719728b0c10
·fabien on Jun 22 2015, 21:06.
Modify signature of AdimensionalSystemSolver constructors
1212aabdfff4
·fabien on Jun 22 2015, 20:58.
Remove print statement
84f2ee511d2e
·fabien on Jun 22 2015, 20:55.
Add a function to print the constraints
0a4a5f442443
·fabien on Jun 22 2015, 20:30.
Add an option to remove half-cell reaction in configuration
08252559070d
·fabien on Jun 22 2015, 20:27.
Fix bug in SpecMiCP configuration
a01084ae1afa
·fabien on Jun 22 2015, 20:26.

Jun 19 2015

Do not remove H[+]/HO[-] when dissolving system
28fbffc41fa8
·fabien on Jun 19 2015, 23:06.

Jun 18 2015

Merge branch 'master' of bitbucket.org:specmicp/specmicp
73f15c1a0b51
·fabien on Jun 18 2015, 16:18.
Add tests for condition number estimations
e9990c0c136f
·fabien on Jun 18 2015, 16:13.

Jun 12 2015

Transform the cemdata database to YAML formatting
56cb58fdb924
·fabien on Jun 12 2015, 20:35.
Fix report of wrong label for the composition in the database
3867cdd1bfe7
·fabien on Jun 12 2015, 20:29.
Add option to remove all half-cells reactions
f3e5ca061b88
·fabien on Jun 12 2015, 20:28.

Jun 10 2015

Add library directories for yaml
a4c639058982
·georget on Jun 10 2015, 19:55.
Add more tests for the database module
ec8c87bf41c2
·fabien on Jun 10 2015, 16:22.
Correct includes in io files
7fee7928fda3
·fabien on Jun 10 2015, 16:21.
Fix, minor improvements in SpecMiCP module
1d81493e610c
·fabien on Jun 10 2015, 16:20.
Fixes in the database module
54c13dbb2616
·fabien on Jun 10 2015, 16:17.
Correct include directories in FindSpecMiCP module
5c12af45fc6a
·fabien on Jun 10 2015, 16:15.

Jun 9 2015

Documentation
f9d6ee556023
·fabien on Jun 9 2015, 14:44.
Update requirements in INSTALL
393bfca29057
·fabien on Jun 9 2015, 05:56.
Remove jsoncpp from the tree
e398b85a0be5
·fabien on Jun 9 2015, 05:54.

Historymaster9de2802aad381a81e58f571…

Oct 14 2015

Oct 5 2015

Oct 3 2015

Oct 1 2015

Sep 29 2015

Sep 26 2015

Sep 14 2015

Sep 9 2015

Aug 11 2015

Jul 20 2015

Jul 17 2015

Jul 16 2015

Jul 15 2015

Jul 13 2015

Jun 29 2015

Jun 25 2015

Jun 24 2015

Jun 23 2015

Jun 22 2015

Jun 19 2015

Jun 18 2015

Jun 12 2015

Jun 10 2015

Jun 9 2015

History
master9de2802aad381a81e58f571…