Diffusion SpecMiCP / ReactMiCP (master) History

reactmicp
master7960b6475c740fc9a17effe…

Dec 16 2015

fix: fix commit 9d4326f where some stuff where deleted by error
7960b6475c74
·fabien on Dec 16 2015, 22:15.
doc: remove lots of warning in doc generation
9d4326f47013
·fabien on Dec 16 2015, 17:49.

Nov 26 2015

Merge branch 'master' of bitbucket.org:specmicp/specmicp
d772a6bdc096
·fabien on Nov 26 2015, 18:26.
fix: save the correct total solid concentration for the aqueous components
4b6fe1ca457f
·fabien on Nov 26 2015, 18:23.
impr: also save the porosity in the unsaturated output file
6b2e41bc75f2
·fabien on Nov 26 2015, 18:23.
fix: do not include gas equation if it is merged with the aqueous equation
b15da4066f57
·fabien on Nov 26 2015, 18:20.
fix: Add missing extern template instanciation in transport stagger
d274109c12fc
·fabien on Nov 26 2015, 18:19.
impr: what if the previous solution is not valid ?
60d533873806
·fabien on Nov 26 2015, 18:18.
impr: use average functions to do average in equations
13d195f6c7f5
·fabien on Nov 26 2015, 18:16.

Nov 25 2015

fix: fix hdf5 cmake include dirs/definitions, yes again...
f77af9a60aa4
·fabieng on Nov 25 2015, 05:24.
fix: fix include dir hdf5 (second)
82934be6a211
·fabien on Nov 25 2015, 04:26.
fix: correct include directories for HDF5
6c0ef321bcf9
·fabien on Nov 25 2015, 04:11.

Nov 23 2015

feat: use merged equations in transport stagger
7a5ed612bb39
·fabien on Nov 23 2015, 23:03.
feat: add merged equation gas+aqueous
9f263e40c9a9
·fabien on Nov 23 2015, 23:00.

Nov 21 2015

impr: add member to compute vapor pressure at a node
fe730a86a4bc
·fabien on Nov 21 2015, 00:48.

Nov 20 2015

fix : unsaturated reactive transport is working ! but slow...
a6c6bddc3c1f
·fabien on Nov 20 2015, 22:49.
feat: use new SaturationPressureEquation in transport stagger
05403a90982d
·fabien on Nov 20 2015, 15:07.
impr: use the template instanciation from equation units in transport stagger
ecdedfed7695
·fabien on Nov 20 2015, 15:07.
feat: add SaturationPressureEquation
9a2ffe1a0437
·fabien on Nov 20 2015, 15:07.
impr: use ValueChecker to check unsaturated variables
6ce35e10c6f3
·fabien on Nov 20 2015, 15:07.
impr: introduce FV1DOFEquation
276744263d3d
·fabien on Nov 20 2015, 15:05.

Nov 15 2015

feat: save transport properties as well
3390f8785beb
·fabien on Nov 15 2015, 21:43.
feat: save unsaturated variables
648ee677491f
·fabien on Nov 15 2015, 21:43.
feat : HDF5File : wrapper around a HDF5 file
8f9891f52ab4
·fabien on Nov 15 2015, 21:43.

Nov 11 2015

Add openmp support in equilibrium/transport stagger
e56213af5020
·fabien on Nov 11 2015, 21:54.
API of equilibrium/transport staggers
008df9c9036e
·fabien on Nov 11 2015, 21:54.
Fix/correction/improvement of equilibrium stagger
49e681b556ec
·fabien on Nov 11 2015, 21:54.
variables_interface can initialize node with AdimensionnalExtractor
d536fc3e2489
·fabien on Nov 11 2015, 21:54.
Use relative residuals (per equation) in transport stagger
883b66536f20
·fabien on Nov 11 2015, 21:54.
Allow the user to give a scaling factor for the residuals of each equations
c4d70155deca
·fabien on Nov 11 2015, 21:54.
feat: support for a gas diffusivity per species
55a26ac091b1
·fabien on Nov 11 2015, 21:54.

Oct 26 2015

add EquilibriumStagger to unsaturated system
328860e72934
·fabien on Oct 26 2015, 23:06.
add EquilibriumConstraints to the unsaturated systems
19b14f34e6cc
·fabien on Oct 26 2015, 23:04.
impr: variables: doc, gas, chemistry
c61df97b5350
·fabien on Oct 26 2015, 23:02.
doc : some documentations for transport equations and stagger
ed266db573ec
·fabien on Oct 26 2015, 22:55.

Oct 22 2015

impr: add VariablesInterface in unsaturated system
c9febc252301
·fabien on Oct 22 2015, 22:40.

Oct 21 2015

fix: transport stagger and equations for drying stagger
574c04e43124
·fabien on Oct 21 2015, 22:11.
fix : fix transport constraints
137ca1c0b377
·fabien on Oct 21 2015, 22:10.
fix: fix variables for the drying example
b725b3cc80ed
·fabien on Oct 21 2015, 22:09.

Oct 14 2015

Transport stagger for unsaturated system
1d28f469e61d
·fabien on Oct 14 2015, 22:03.
Aqueous liquid transport equation (unsaturated)
9de2802aad38
·fabien on Oct 14 2015, 22:03.
Gas diffusion equation (unsaturated)
0faef04ff3bc
·fabien on Oct 14 2015, 22:03.
Saturation Equation (unsaturated)
e96f9ec8af07
·fabien on Oct 14 2015, 22:03.
TransportConstraints : constraints for transport equations
9f400fef0c2a
·fabien on Oct 14 2015, 22:03.
Variables for the unsaturated reactive transport system
4e3d1dd452a3
·fabien on Oct 14 2015, 22:03.
associate numbers with StaggerReturnCode for quick debugguing
a7c86055496b
·fabien on Oct 14 2015, 22:03.

Aug 11 2015

impr: refactor the clean_label function
51f3d18104e9
·fabien on Aug 11 2015, 20:21.
impr: use pimpl idiom in transprot stagger
87008f18555b
·fabien on Aug 11 2015, 18:16.
impr: flag to use chemistry rate in residual computation
f55d9b72639e
·fabien on Aug 11 2015, 16:49.

Jul 17 2015

feat: print saturation index in reactmicp output
d8ef5759bebd
·fabien on Jul 17 2015, 16:41.

Jul 15 2015

refactor: reactmicp::io::OutputNodalVariables
79ea7fb9bd4c
·fabien on Jul 15 2015, 23:41.

Jun 25 2015

fix: fix warning du to signed/unsigned comparison
668f776a2727
·fabien on Jun 25 2015, 22:50.

Jun 22 2015

Modify signature of AdimensionalSystemSolver constructors
1212aabdfff4
·fabien on Jun 22 2015, 20:58.

Jun 10 2015

Correct includes in io files
7fee7928fda3
·fabien on Jun 10 2015, 16:21.

Jun 8 2015

Update configurations to use the new updates in YAML module
35f1ce4a8720
·fabien on Jun 8 2015, 19:44.

Jun 5 2015

Add Configuration for formulation
7178ca623984
·fabien on Jun 5 2015, 03:38.

May 25 2015

Start configuration for ReactMiCP
025051f8bb41
·fabien on May 25 2015, 21:55.

May 22 2015

Add UserTermination in DiffusiveUpscalingStagger
a7f264f4cbb4
·fabien on May 22 2015, 15:44.

May 20 2015

Flush output for regular output
4de161c78d57
·fabien on May 20 2015, 19:58.
Correct (?) treatment of fixed components
c082bf825032
·fabien on May 20 2015, 15:03.
Style corrections
009a007fe380
·fabien on May 20 2015, 14:50.

May 18 2015

Remove duplicate line in transport staggerd of saturated system
7499194f1147
·fabien on May 18 2015, 20:13.
Add option to save total concentrations
2a708c0db172
·fabien on May 18 2015, 20:13.
Cmake files again
debf6abf5a42
·fabien on May 18 2015, 17:10.
Add SPECMICP_DLL_PUBLC/SPECMICP_DLL_LOCAL attributes in reactmicp
11a3e9886bfd
·fabien on May 18 2015, 00:33.

May 15 2015

Add configuration functions for DFPM/ReacMiCP
b249ffddc332
·fabien on May 15 2015, 03:08.

May 14 2015

Add a class to output var fron SaturatedVariables
c119a9c6a811
·fabien on May 14 2015, 21:05.

May 13 2015

Add base class for output/CSV file
f48b6ea5015e
·fabien on May 13 2015, 23:14.
IO module for ReactMiCP
d00d17fb19ee
·fabien on May 13 2015, 15:43.
Lots of minor fixes
b37bc6fcac85
·fabien on May 13 2015, 15:42.
Namespace documentation
ef44ef6723d3
·fabien on May 13 2015, 15:36.
Correct linking for dfpm and reactmicp libs
04a2a87d5f98
·fabien on May 13 2015, 15:10.

May 12 2015

Move io modules for reactmicp into the reactmicp module
13e411554225
·fabien on May 12 2015, 21:50.
Kinetic stagger for ReactMiCP
5c3bb71fa606
·fabien on May 12 2015, 19:38.

May 5 2015

Add a simple DiffusiveUpscalingStagger
121163d3d7a7
·fabien on May 5 2015, 20:01.

May 3 2015

Give access to the vector of AdimensionalSystemSolution
e961026e5a94
·fabien on May 3 2015, 22:21.

Apr 28 2015

Use static libraries for all tests
8208e107ea62
·fabien on Apr 28 2015, 05:21.
Fixes to compile with Clang (3.6.0)
9c9d231a7dfd
·fabien on Apr 28 2015, 01:27.

Apr 24 2015

Fix/Improve reactmicp return code handling
ce616e309344
·fabien on Apr 24 2015, 16:45.

Apr 22 2015

Minor fixes in Cmake files
40a28cb7668f
·fabien on Apr 22 2015, 01:49.

Apr 21 2015

correct inclusion of headers
4dde22e2e8fc
·fabien on Apr 21 2015, 21:58.
Proper installation of cython/databases/doc
d05c342d7b8f
·fabien on Apr 21 2015, 17:23.
finally, SpecMiCP/ReactMiCP can be installed
367d9d550e9d
·fabien on Apr 21 2015, 05:24.

Apr 15 2015

License update before release
b174f1ddf352
·tag: 0.0.3
·fabien on Apr 15 2015, 22:11.

Apr 2 2015

Fixes strange allocation bug in ReactiveTransportRunner
cdf89e2fd60f
·fabien on Apr 2 2015, 05:25.
Update licence
ed9f62bffad3
·fabien on Apr 2 2015, 02:56.
No diffusion of the electron
d8b65021bdf9
·branch: oxydoreduc
·fabien on Apr 2 2015, 02:34.

Mar 25 2015

Update ReactMiCP for the new databse module
3240263f41a0
·fabien on Mar 25 2015, 20:22.

Mar 24 2015

Remove all the old code in the reactmicp folder
dfd04be5d63c
·fabien on Mar 24 2015, 19:06.

Mar 19 2015

Improve the OpenMP section
cb15e034fead
·tag: 0.0.2
·fabien on Mar 19 2015, 19:16.

Mar 17 2015

Add a runner class for the reactive transport solver
a1bb082f067b
·fabien on Mar 17 2015, 15:45.
In reactive transpor solver, return a reference to the timer instead of a copy
c9a42d8c3f55
·fabien on Mar 17 2015, 15:44.
Add the member reset_main_variables in reactmicp::solver::VariablesBase
e5adba3b79c0
·fabien on Mar 17 2015, 15:42.
import reactive transport timestepper
08dbc2f3e912
·fabien on Mar 17 2015, 15:38.

Mar 13 2015

Remove the check for Total concentration too small in the reactive transport…
2ab1f72f9891
·fabien on Mar 13 2015, 04:14.
Remove the cut-off for including a component in the total concentration; the…
d16ed536054f
·fabien on Mar 13 2015, 02:55.

Mar 6 2015

add member function is SaturatedVariables to access main variables directly
331aa30110ba
·fabien on Mar 6 2015, 14:42.

Mar 4 2015

Minor enhancements in the Timestepper
f26e0452c13c
·fabien on Mar 4 2015, 19:47.

Mar 2 2015

improve detection of problems in the ReactiveTransportSolver
5acd30632a6a
·fabien on Mar 2 2015, 21:29.

Feb 28 2015

Add more information about time in ReactiveTransportPerformance
abe3dbcbe88d
·fabien on Feb 28 2015, 23:36.

specmicp/src/reactmicpmaster7960b6475c740fc9a17effe…

Dec 16 2015

Nov 26 2015

Nov 25 2015

Nov 23 2015

Nov 21 2015

Nov 20 2015

Nov 15 2015

Nov 11 2015

Oct 26 2015

Oct 22 2015

Oct 21 2015

Oct 14 2015

Aug 11 2015

Jul 17 2015

Jul 15 2015

Jun 25 2015

Jun 22 2015

Jun 10 2015

Jun 8 2015

Jun 5 2015

May 25 2015

May 22 2015

May 20 2015

May 18 2015

May 15 2015

May 14 2015

May 13 2015

May 12 2015

May 5 2015

May 3 2015

Apr 28 2015

Apr 24 2015

Apr 22 2015

Apr 21 2015

Apr 15 2015

Apr 2 2015

Mar 25 2015

Mar 24 2015

Mar 19 2015

Mar 17 2015

Mar 13 2015

Mar 6 2015

Mar 4 2015

Mar 2 2015

Feb 28 2015

specmicp/src/reactmicp
master7960b6475c740fc9a17effe…