Diffusion tamaas (features/netcdf-mpi) History

netcdf-mpic36392a995741798475034d…

May 31 2021

re-established sort order for eigenvalues
c36392a99574
·frerot on May 31 2021, 16:54.

May 29 2021

removing remnants of fftw's interface
fd9661c88813
·frerot on May 29 2021, 20:36.
added experimental cuda warning
7faf5c9d3692
·frerot on May 29 2021, 20:13.

May 28 2021

not linking against fftw if cuda is used
0ae1a96db417
·frerot on May 28 2021, 22:59.
reorganized fftw files in their own directory
d1dc26e4556a
·frerot on May 28 2021, 21:31.
Merge branch 'master' into features/cuda
fde6a532b8a1
·frerot on May 28 2021, 19:40.
always compiling mpi_interface.cpp
2baa944ac358
·frerot on May 28 2021, 19:40.
making the whole library compile with cuda
0257e3cb2f4e
·frerot on May 28 2021, 17:15.
fft engine for cuda
6b9140c22c9b
·frerot on May 28 2021, 05:39.

May 27 2021

more progress to have tamaas compile with nvcc
cb90433efaab
·frerot on May 27 2021, 22:23.

May 25 2021

ensuring uniform surface generator seed accross processes
7e692627014a
·frerot on May 25 2021, 18:14.

May 19 2021

more compatibility with cuda
0f189d10cd98
·frerot on May 19 2021, 21:54.
manually sorting eigenvalues instead of thrust::sort
31f5a4526a6e
·frerot on May 19 2021, 20:14.
using cuda-compatible exchange function instead of std::exchange
c159445c87fb
·frerot on May 19 2021, 20:14.
avoiding pointless comparison with 0 warning
227f8de0a319
·frerot on May 19 2021, 20:13.
__device__, __host__, CUDA_LAMBDA annotations
b2df7a0d87de
·frerot on May 19 2021, 20:12.

May 13 2021

displaying log level + debug logs in tamaas.cpp
751788025682
·frerot on May 13 2021, 21:50.

Apr 27 2021

fixed order of inputs in Model::solveDirichlet
d6c631e7cf83
·frerot on Apr 27 2021, 18:02.

Apr 26 2021

marking test_epic and westergaard_multi as xfail if backend == 'tbb'
93a4d5811ae9
·frerot on Apr 26 2021, 05:22.

Apr 20 2021

mpi-compatible implementation of getClusters()
64e101c13b91
·frerot on Apr 20 2021, 21:23.

Mar 20 2021

[doc] silencing warnings when generating documentation
6c56b69be4a2
·frerot on Mar 20 2021, 00:57.

Mar 17 2021

separating TAMAAS_BACKEND to reflect the build parameters
b2f9e4544b61
·frerot on Mar 17 2021, 22:23.

Mar 15 2021

using SCons File and Dir instead of os.path functions
8ea64976e79c
·frerot on Mar 15 2021, 01:19.

Mar 14 2021

avoid using main_env in SConscripts
70977949d1a6
·frerot on Mar 14 2021, 04:34.

Mar 8 2021

removing useless symmetrize function in residual
754d1b054d56
·frerot on Mar 8 2021, 17:46.

Feb 16 2021

missed some 2021 copyright years
2c28855671d3
·frerot on Feb 16 2021, 21:54.

Jan 7 2021

stopped using leading and trailing __ in header guards
2b523bbf68a7
·frerot on Jan 7 2021, 02:54.
Merge branch 'deprecated_bindings'
10e17acc88ce
·frerot on Jan 7 2021, 01:58.
removed all legacy code
8b01fcdb4d21
·frerot on Jan 7 2021, 01:32.
deprecated old bindings
dd37e82c03d3
·frerot on Jan 7 2021, 01:28.

Jan 5 2021

adding [] operator to Model class
7be77d61e712
·frerot on Jan 5 2021, 18:08.

Jan 4 2021

const correctness of fftengine
af6a620b3dce
·frerot on Jan 4 2021, 22:47.

Jan 1 2021

Dec 31 2020

added number of dumpers in model << output
8b57ac4133c5
·frerot on Dec 31 2020, 18:21.
calling setSizes in SurfaceGenerator constructor
07bf72fea9cc
·frerot on Dec 31 2020, 04:51.
adding a constructor with global shape to surface generators
560001b7e019
·frerot on Dec 31 2020, 02:28.
more pythonic bindings of surface generators, solvers and flood fill
9d2cf7093171
·frerot on Dec 31 2020, 01:26.
added bounding box computation for clusters
dd69668f7622
·frerot on Dec 31 2020, 01:25.

Dec 30 2020

more pythonic interface for accessing integral operators
cfbbd07ff0cf
·frerot on Dec 30 2020, 23:02.

Dec 14 2020

renamed USE_CUDA macro to TAMAAS_USE_CUDA
44fd0470bd21
·frerot on Dec 14 2020, 18:05.

Dec 10 2020

only warning once about mpi
460a2d811c4e
·frerot on Dec 10 2020, 03:46.
properly setting size of underlying array in grid views
cbef215a579d
·frerot on Dec 10 2020, 03:24.

Dec 9 2020

added newline for debug messages
c6cda5e747be
·frerot on Dec 9 2020, 22:57.
fixed a bug in the computation of grid strides
10c9ddd1e0e0
·frerot on Dec 9 2020, 22:56.

Dec 8 2020

correcting fundamental mode only on root rank
02240a9f1952
·frerot on Dec 8 2020, 22:20.
adding method for global discretization in model
fe04638c6ab7
·frerot on Dec 8 2020, 21:46.
uniform debug messages with TAMAAS_DEBUG_MSG macro
83b12befa682
·frerot on Dec 8 2020, 17:16.

Dec 7 2020

adding has_mpi to TamaasInfo class
09634dfd5d9d
·frerot on Dec 7 2020, 18:06.

Dec 4 2020

prepared implementation of parallel dumpers
a9371b17cdd2
·frerot on Dec 4 2020, 22:23.

Dec 1 2020

making an fftengine on the fly in stats functions
24b0fa8bbc51
·frerot on Dec 1 2020, 21:14.
added wrapping of local_{size,offset} partitioner functions
3503d740b538
·frerot on Dec 1 2020, 21:13.

Nov 27 2020

added some debug log messages
e290de0838e8
·frerot on Nov 27 2020, 17:52.

Nov 25 2020

Merge branch 'feature/mpi_fft_engine'
fdea6b4ef4a4
·frerot on Nov 25 2020, 21:35.
added experimental mpi warning
f5786e6cbeff
·frerot on Nov 25 2020, 21:29.

Oct 23 2020

added a function to compute deviatoric of sym tensor fields
54aab33e784a
·frerot on Oct 23 2020, 21:58.

Sep 1 2020

rename USE_MPI to TAMAAS_USE_MPI
a18819dd25e3
·frerot on Sep 1 2020, 23:26.
Merge branch 'master' into feature/mpi_fft_engine
ddb30ba41df9
·frerot on Sep 1 2020, 23:22.

Aug 31 2020

removed useless operator= for ToleranceManager
0f3eef3f390e
·frerot on Aug 31 2020, 21:15.
silenced warnings about deprecated copy ctors
5e6c40b035b2
·frerot on Aug 31 2020, 19:00.

Aug 13 2020

added helper method to compute (corrected) contact areas
c9eb34ff4665
·frerot on Aug 13 2020, 17:15.

Aug 8 2020

prefer this email
3838c1d4ac9d
·frerot on Aug 8 2020, 01:04.

Aug 6 2020

updating emails and refreshing pipe_tools
bb36f61af70a
·frerot on Aug 6 2020, 23:54.
allowing other fftw flags in mpi engine
80617eef9978
·frerot on Aug 6 2020, 01:24.
reducing float test tolerance to 4ε
9d631430e38f
·frerot on Aug 6 2020, 01:22.

Aug 3 2020

[DOC] adding paragraph on integration methods
4281604d9e17
·frerot on Aug 3 2020, 22:26.
Merge branch 'feature/dfsane'
0aff1cd1a985
·frerot on Aug 3 2020, 21:28.
allowing the use of ToleranceManager on C++ solvers
03fcf739ce5a
·frerot on Aug 3 2020, 21:20.
tested implementation of C++ DFSANESolver
510fc333cb53
·frerot on Aug 3 2020, 19:41.
avoid duplication of -fPIC flag
e1de40e29467
·frerot on Aug 3 2020, 16:09.

Aug 2 2020

allowing compilation without OpenMP
d6d8134e1bba
·frerot on Aug 2 2020, 02:07.

Aug 1 2020

tentative implementation of DFSANESolver
cf36e15d08a3
·frerot on Aug 1 2020, 01:42.

Jul 29 2020

renamed packaging_setup option to build_static_lib
cbe79569b127
·frerot on Jul 29 2020, 16:29.
packaging setup now generates static libTamaas
77e32d9a06e7
·frerot on Jul 29 2020, 03:21.

Jul 28 2020

adding $ORIGIN to libTamaas RPATH
9114496fb1c5
·frerot on Jul 28 2020, 00:19.

Jul 27 2020

adding version number to tamaas info
d200a63e05b6
·frerot on Jul 27 2020, 17:36.
added skeleton for DFSANE C++ solver
6a23416b0bff
·frerot on Jul 27 2020, 17:15.

Jul 24 2020

log warning instead of exception for possible overflow in kelvin
022c85aa37f2
·frerot on Jul 24 2020, 17:25.

Jul 17 2020

using global datasize/nbpoints functions when needed
e51c229537c2
·frerot on Jul 17 2020, 21:04.

Jul 15 2020

proper singleton for mpi::comm::world ensures working seq_guard
a9660ef02eed
·frerot on Jul 15 2020, 21:56.

Jul 14 2020

initializing model with local MPI sizes
9b70d3fba43f
·frerot on Jul 14 2020, 20:24.

Jul 12 2020

added mpi::sequential_guard
254daee554df
·frerot on Jul 12 2020, 14:12.
allowing 1D tests to pass
773514f8cf45
·frerot on Jul 12 2020, 02:59.
added a sequential context manager
ea6e316a0703
·frerot on Jul 12 2020, 01:30.
added some debug logs
b8ad8692d3ee
·frerot on Jul 12 2020, 01:30.
normalizing backward transforms in FFTWMPIEngine
6bd2aef6b143
·frerot on Jul 12 2020, 01:30.
removed explicit refs to MPI_COMM_WORLD
6819d831b8a4
·frerot on Jul 12 2020, 01:29.

Jul 11 2020

fixing concurrent random number generation
136efda36dc9
·frerot on Jul 11 2020, 23:02.
computeFrequencies now takes local sizes as argument
2696ba6deb02
·frerot on Jul 11 2020, 23:01.
fixing backwards mpi transforms
29100a290c77
·frerot on Jul 11 2020, 23:01.
passing test for FFTMPI on multicomponents grid
621f49e8820d
·frerot on Jul 11 2020, 20:08.
implemented + tested mpi version of FFTEngine::computeFrequencies
0672d04558bb
·frerot on Jul 11 2020, 17:34.
testing FFTWMPIEngine
77f5b675fc9d
·frerot on Jul 11 2020, 05:17.

Jul 10 2020

Merge branch 'master' into feature/mpi_fft_engine
0defcff64961
·frerot on Jul 10 2020, 23:59.
redirecting iostreams to python streams for solve functions
6124726e1b08
·frerot on Jul 10 2020, 23:27.
using std::shared_ptr<Functional> as holder type for functionals
aba0a246fdf6
·frerot on Jul 10 2020, 18:04.
using Partitioner in FFTWMPIEngine
35c4836d6e63
·frerot on Jul 10 2020, 00:27.
added polymorphism to FFTEngines
0752a2fdb670
·frerot on Jul 10 2020, 00:06.

Jul 9 2020

have the same seed for surface gentor across mpi processes
6c2964a9d4d1
·frerot on Jul 9 2020, 20:35.
adding tests for partitioner
9775a947c07f
·frerot on Jul 9 2020, 20:34.
removed stray tm.finalize's in tests
212e9544374c
·frerot on Jul 9 2020, 17:49.

tamaas/srcfeatures/netcdf-mpic36392a995741798475034d…

May 31 2021

May 29 2021

May 28 2021

May 27 2021

May 25 2021

May 19 2021

May 13 2021

Apr 27 2021

Apr 26 2021

Apr 20 2021

Mar 20 2021

Mar 17 2021

Mar 15 2021

Mar 14 2021

Mar 8 2021

Feb 16 2021

Jan 7 2021

Jan 5 2021

Jan 4 2021

Jan 1 2021

Dec 31 2020

Dec 30 2020

Dec 14 2020

Dec 10 2020

Dec 9 2020

Dec 8 2020

Dec 7 2020

Dec 4 2020

Dec 1 2020

Nov 27 2020

Nov 25 2020

Oct 23 2020

Sep 1 2020

Aug 31 2020

Aug 13 2020

Aug 8 2020

Aug 6 2020

Aug 3 2020

Aug 2 2020

Aug 1 2020

Jul 29 2020

Jul 28 2020

Jul 27 2020

Jul 24 2020

Jul 17 2020

Jul 15 2020

Jul 14 2020

Jul 12 2020

Jul 11 2020

Jul 10 2020

Jul 9 2020

tamaas/src
features/netcdf-mpic36392a995741798475034d…