Diffusion tamaas (petsc) History

tamaas/python/tamaas
petsc5af9f717d0f1af26047a1c3…

Aug 18 2022

using proper dtypes in NetCDFDumper
92c59a88dbfd
·frerot on Aug 18 2022, 17:40.

Jul 19 2022

using all-version citation for zenodo archive
3803465f500f
·frerot on Jul 19 2022, 10:27.

Jul 18 2022

added a simple span<T> class to help manage memory views
912f89c59336
·frerot on Jul 18 2022, 16:28.

Jul 1 2022

added option to turn off directory dump in dumpers
3e30cf120309
·frerot on Jul 1 2022, 11:20.

Jun 29 2022

updated copyrights for Python files
a674186d994c
·frerot on Jun 29 2022, 14:49.

Jun 28 2022

added tamaas.utils.radial_average
22ae9a858766
·frerot on Jun 28 2022, 09:55.

Jun 20 2022

added copyright, maintainer, license to config files
b4188719be68
·frerot on Jun 20 2022, 11:36.

May 12 2022

added dump of surface fields in VTK files
7b5ec4cc38d8
·frerot on May 12 2022, 15:29.
fixed decorator ordering
38eb11899a50
·frerot on May 12 2022, 13:32.

May 11 2022

added netcdf to paraview file conversion
a8986393d27a
·frerot on May 11 2022, 14:06.
added @classmethod for read functions in dumpers
24351fe95e2b
·frerot on May 11 2022, 14:02.

May 9 2022

flake8 formating
93fa1380f6bd
·frerot on May 9 2022, 12:49.

May 6 2022

correctly handling dump mpi compatibility
d19c6d819ecd
·frerot on May 6 2022, 17:32.
using local and global variables for publications
94fe16d9801f
·frerot on May 6 2022, 10:39.
refreshed README
0eb41bf3cc68
·frerot on May 6 2022, 09:32.

May 5 2022

added tests for netcdf mpi IO
2eedc50cbe2c
·frerot on May 5 2022, 13:53.

May 2 2022

added __all__ definition in utils.py
41d64abe7e11
·frerot on May 2 2022, 13:23.

Apr 25 2022

adding Tamaas information to dump files
1825edb7098a
·frerot on Apr 25 2022, 14:09.

Apr 14 2022

NetCDFDumper can now dump in MPI
fdd25350ee5b
·frerot on Apr 14 2022, 15:23.
defining boundary field predicate in C++
808f4ef5312b
·frerot on Apr 14 2022, 15:18.

Apr 5 2022

added tamaas.utils.publications to print relevant publications
3901c186d1d1
·frerot on Apr 5 2022, 13:43.

Mar 21 2022

added a read_sequence method to read data frames
932a5e9b9558
·frerot on Mar 21 2022, 11:55.

Mar 16 2022

refreshed dumpers private API
00e5015563d2
·frerot on Mar 16 2022, 13:38.

Mar 10 2022

added generator of surfaces from a sequence of seeds
8b1f18b91b90
·frerot on Mar 10 2022, 10:54.

Mar 7 2022

[doc] cleaned up API auto documentation
d4e72444f397
·frerot on Mar 7 2022, 11:14.

Mar 3 2022

simplified member functions in nonlinear_solvers
161d5979b7fc
·frerot on Mar 3 2022, 17:45.

Mar 2 2022

[doc] added documentation for utils module
94d9ff2f1a64
·frerot on Mar 2 2022, 15:54.

Mar 1 2022

added tamaas.utils which contains some QOL functions
6885f6dd2d1e
·frerot on Mar 1 2022, 15:10.
[doc] docstrings in __main__.py
4ba31ed94a65
·frerot on Mar 1 2022, 14:41.

Jan 4 2022

updated copyright
2b24d9d43e38
·frerot on Jan 4 2022, 10:40.

Nov 4 2021

gracefully fail 'plot' if matplotlib is missing
9afe65f91937
·frerot on Nov 4 2021, 16:46.
more robust testing if field is a boundary field
559faac5412a
·frerot on Nov 4 2021, 14:27.

Aug 20 2021

python linting
fc069823b134
·frerot on Aug 20 2021, 23:52.

Aug 4 2021

added a `--version` flag to the tamaas command
5871c9edfbdb
·frerot on Aug 4 2021, 19:58.

Jul 20 2021

[ci] using flake8 for linting of python code
7eab7018c9f3
·frerot on Jul 20 2021, 01:33.

Jul 6 2021

using json to dump model attributes in NumpyDumper
0347e231c864
·frerot on Jul 6 2021, 17:16.

Jun 11 2021

migrated repository to gitlab
79355c2aefe7
·frerot on Jun 11 2021, 21:08.

Jun 10 2021

cleaned up license headers
1fc7644bad52
·frerot on Jun 10 2021, 22:30.

May 7 2021

adding type annotations and using f-strings for dumpers
3557cd97a518
·frerot on May 7 2021, 04:29.

May 1 2021

using git to create tarball archive
d3dfb81c535e
·frerot on May 1 2021, 05:00.
using versionneer to manage version numbers
bb4c6112532f
·frerot on May 1 2021, 00:58.

Apr 26 2021

forgot `import os`
7fc91b79d964
·frerot on Apr 26 2021, 16:33.
better handling of file descriptors in JSONDumper
287cf88791d0
·frerot on Apr 26 2021, 16:15.
marking test_epic and westergaard_multi as xfail if backend == 'tbb'
93a4d5811ae9
·frerot on Apr 26 2021, 05:22.

Apr 25 2021

testing UVW writes
3438ff37dbe4
·frerot on Apr 25 2021, 23:48.
added JSON dumping capability and fixed dump issues ∀ model types
0d37c22cb392
·frerot on Apr 25 2021, 23:37.
using pathlib instead of os.path in dumpers
a5ad130c558f
·frerot on Apr 25 2021, 19:30.

Apr 19 2021

allowing model read from HDF5 with MPI
86e5cb1e1789
·frerot on Apr 19 2021, 20:09.

Apr 17 2021

added read method to NetCDFDumper
97bffadf7b6a
·frerot on Apr 17 2021, 01:04.
added sequential read function to H5Dumper
0ba6912bc122
·frerot on Apr 17 2021, 00:21.

Apr 16 2021

added read method to FieldDumper (raises RuntimeError)
0fad580005ff
·frerot on Apr 16 2021, 23:04.
added read() method to NumpyDumper
da270d6f9606
·frerot on Apr 16 2021, 22:55.

Apr 6 2021

corrected description of `tamaas` command
d088bf7abd63
·frerot on Apr 6 2021, 20:39.
writing surface info in text header instead of numpy file
b4d5adb73bc8
·frerot on Apr 6 2021, 20:32.
added dump option to `surface` command
67d6e4dc8646
·frerot on Apr 6 2021, 18:12.

Apr 5 2021

silencing warning about missing uvw package
9c33983aed18
·frerot on Apr 5 2021, 17:17.

Apr 2 2021

added an entry point `tamaas` with three sub-commands
6a713f330f44
·frerot on Apr 2 2021, 17:19.

Mar 20 2021

[doc] silencing warnings when generating documentation
6c56b69be4a2
·frerot on Mar 20 2021, 00:57.

Mar 13 2021

not importing uvw.parallel in UVWDumper
db2125bf48ed
·frerot on Mar 13 2021, 01:11.

Jan 14 2021

setup netcdf dumper for parallel writes
46db5babbf1a
·frerot on Jan 14 2021, 23:41.

Jan 7 2021

Merge branch 'deprecated_bindings'
10e17acc88ce
·frerot on Jan 7 2021, 01:58.
deprecated old bindings
dd37e82c03d3
·frerot on Jan 7 2021, 01:28.

Jan 5 2021

modified dumpers for new interface
9054b97f8b37
·frerot on Jan 5 2021, 00:06.

Jan 1 2021

copyright year 2021
2316c9ebcdd7
·frerot on Jan 1 2021, 07:47.

Dec 9 2020

updated stress example to run with mpi
73a8b44d38ce
·frerot on Dec 9 2020, 23:20.

Dec 8 2020

protecting mkdir in @directory_dump
695f2e0111b0
·frerot on Dec 8 2020, 22:18.
added readonly properties to python model bindings
74402ed7185c
·frerot on Dec 8 2020, 21:47.
converting only dumped fields in hdf5toVTK
eed5bd5407de
·frerot on Dec 8 2020, 21:45.
added helper function to convert hdf5 model dump to VTK
6f1bb5d3d5ce
·frerot on Dec 8 2020, 19:45.
raising exception if scipy solvers are used with MPI
f739905b88d2
·frerot on Dec 8 2020, 17:04.
use uvw.RectilinearGrid instead of parallel variant
09b1019f9242
·frerot on Dec 8 2020, 17:03.

Dec 4 2020

raising when NumpyDumper is called in parallel
1af5c7f89584
·frerot on Dec 4 2020, 22:28.
prepared implementation of parallel dumpers
a9371b17cdd2
·frerot on Dec 4 2020, 22:23.
added type traits to python interface
b4ec536528a2
·frerot on Dec 4 2020, 19:59.

Aug 7 2020

fixing errors for python 2
69c13358055d
·frerot on Aug 7 2020, 22:56.

Aug 5 2020

overwrite netcdf file on first dump
87299a2f0e72
·frerot on Aug 5 2020, 20:36.
creating variables with right dimensions in netcdf dumper
555b9d18b1d5
·frerot on Aug 5 2020, 20:27.

Aug 4 2020

netcdf dumper now writes frames to a single file
357aabe906d0
·frerot on Aug 4 2020, 23:02.

Aug 3 2020

Merge branch 'feature/dfsane'
0aff1cd1a985
·frerot on Aug 3 2020, 21:28.
allowing the use of ToleranceManager on C++ solvers
03fcf739ce5a
·frerot on Aug 3 2020, 21:20.
tested implementation of C++ DFSANESolver
510fc333cb53
·frerot on Aug 3 2020, 19:41.

Jul 29 2020

avoiding circular imports
8db558711c4c
·frerot on Jul 29 2020, 18:31.

Jul 22 2020

not flattening arrays in netcdf dumper
af08c7abcf2c
·frerot on Jul 22 2020, 14:02.

Jul 10 2020

redirecting iostreams to python streams for solve functions
6124726e1b08
·frerot on Jul 10 2020, 23:27.

Jun 12 2020

fixing recursion issue with ToleranceManager
ff710f40e7e3
·frerot on Jun 12 2020, 01:06.

Jun 11 2020

added compression to UVW dumper
e8c4a114f2ec
·frerot on Jun 11 2020, 20:06.

Jun 9 2020

added a group dumper for paraview data
ace594b68267
·frerot on Jun 9 2020, 21:04.

Jun 8 2020

writing solver infos to stderr
58fde8ae6754
·frerot on Jun 8 2020, 23:42.
simplified helpers in dumpers
022385d24743
·frerot on Jun 8 2020, 23:42.

May 19 2020

better normalization in patch plasticity test
a5c45c2f1235
·frerot on May 19 2020, 17:37.

May 5 2020

updating copyright years
ae0010d56921
·frerot on May 5 2020, 18:13.

Apr 22 2020

making sure tests are passing in python 2.7
c5d6b3690cd1
·frerot on Apr 22 2020, 23:36.

Apr 16 2020

added install dependencies to scons
9d061de7f380
·frerot on Apr 16 2020, 23:41.

Mar 12 2020

removed groups from netcdf dump
52674b12fcc5
·frerot on Mar 12 2020, 15:47.

Mar 11 2020

added netCDF4 dumper
b248a63446d9
·frerot on Mar 11 2020, 20:08.

Sep 24 2019

linting for python
77775028a981
·frerot on Sep 24 2019, 17:27.

Sep 10 2019

do not use f_rtol in scipy.optimize.newton_krylov
3cf4afc77006
·frerot on Sep 10 2019, 13:53.

Jul 29 2019

more pythonic organization of dumpers and solvers
d81014204db3
·frerot on Jul 29 2019, 18:20.

Jul 25 2019

converting to double when using uvw dumper
5ce212cefcd4
·frerot on Jul 25 2019, 17:43.

Jul 10 2019

moved eigenvalues computation to separate submodule + vonMises
05f6175eafb9
·frerot on Jul 10 2019, 12:21.