Diffusion ShoulderDB_ImportSegmentMeasureAnalyze (master) History

R8218/ShoulderCase
masterc184a141308b4ddb75a63f7…

Jun 10 2021

fix: correct point coordinates computation
c184a141308b
·Matthieu Boubat (lbovenus) on Jun 10 2021, 18:08.
refactor: update method to new slice pixel coordinates format
0b11ad5aab62
·Matthieu Boubat (lbovenus) on Jun 10 2021, 18:08.
refactor: add centroid in properties
e9fbfd045dc8
·Matthieu Boubat (lbovenus) on Jun 10 2021, 18:08.
refactor: add missing semi-colon
7682cf1ff5ea
·Matthieu Boubat (lbovenus) on Jun 10 2021, 18:08.
refactor: update methods to new Muscle implementation
2d4235be122f
·Matthieu Boubat (lbovenus) on Jun 10 2021, 18:08.
feat: implemment measureSecond for Muscle
440917107bf1
·Matthieu Boubat (lbovenus) on Jun 10 2021, 18:08.
refactor: update method
1eeeaa4b2ab4
·Matthieu Boubat (lbovenus) on Jun 10 2021, 18:08.
refactor: implement new method to find muscle contact point on sphere
ccaddcb161c4
·Matthieu Boubat (lbovenus) on Jun 10 2021, 18:08.
fix: fix typos and miswritten methods
6a9a002cfd45
·Matthieu Boubat (lbovenus) on Jun 10 2021, 18:08.
refactor: update name of files and properties
ac2fb4d103de
·Matthieu Boubat (lbovenus) on Jun 10 2021, 18:08.
refactor: extract method
9401522bd626
·Matthieu Boubat (lbovenus) on Jun 10 2021, 18:08.
refactor: delete deprecated method
aad46d117615
·Matthieu Boubat (lbovenus) on Jun 10 2021, 18:08.
refactor: extract methods
414ba527aeae
·Matthieu Boubat (lbovenus) on Jun 10 2021, 18:08.
feat: add methods to measure and save masks
8933cf7ccccc
·Matthieu Boubat (lbovenus) on Jun 10 2021, 18:08.
refactor: extract methods
e6f61dc25a12
·Matthieu Boubat (lbovenus) on Jun 10 2021, 18:08.
refactor: remove deprecated methods
cddbf10d18f0
·Matthieu Boubat (lbovenus) on Jun 10 2021, 18:08.
refactor: change properties name
31d1e796f396
·Matthieu Boubat (lbovenus) on Jun 10 2021, 18:08.
refactor: remove code commented out
121738699b89
·Matthieu Boubat (lbovenus) on Jun 10 2021, 18:04.
fix: correct typos
8181f2dfae0f
·Matthieu Boubat (lbovenus) on Jun 10 2021, 17:16.
refactor: update use of slices pixel coordinates
6efe4d9b7784
·Matthieu Boubat (lbovenus) on Jun 10 2021, 16:39.
refactor: extract methods to handle points coordinates and indices of dicom…
de97de6eac0f
·Matthieu Boubat (lbovenus) on Jun 10 2021, 16:38.

Jun 7 2021

feat: add a method to check shoulder side inconsistency with scapula landmarks
95a6c5558b69
·tag: v1.2.0
·Matthieu Boubat (lbovenus) on Jun 7 2021, 15:48.
refactor: remove deprecated elements
a7e18257b5e6
·Matthieu Boubat (lbovenus) on Jun 7 2021, 15:39.
feat: check scapula landmarks consistency with shoulder side
47b8e40b862c
·Matthieu Boubat (lbovenus) on Jun 7 2021, 15:33.
refactor: change some default properties and remove one deprecated property
4ffb7c19ce8e
·Matthieu Boubat (lbovenus) on Jun 7 2021, 15:30.
refactor: adapt data tabulation functions to new SCase
4e7e51256fdc
·Matthieu Boubat (lbovenus) on Jun 7 2021, 09:55.

Jun 4 2021

refactor: add varargin to methods called by measureSCase special measurements
7b9028719737
·Matthieu Boubat (lbovenus) on Jun 4 2021, 19:35.
fix: prevent char/string conflict
741660c11f07
·Matthieu Boubat (lbovenus) on Jun 4 2021, 19:34.
refactor: format methods to new method structure
21be82781c48
·Matthieu Boubat (lbovenus) on Jun 4 2021, 18:09.
feat: implement function to create empty SCases
f3f049267438
·Matthieu Boubat (lbovenus) on Jun 4 2021, 18:07.
refactor: extrac and format methods
73037b50d9cd
·Matthieu Boubat (lbovenus) on Jun 4 2021, 17:02.
fix: fix typos
2917fad9056e
·Matthieu Boubat (lbovenus) on Jun 4 2021, 16:37.
refactor: extract method and format object
6551526c54a2
·Matthieu Boubat (lbovenus) on Jun 4 2021, 15:39.
fix: change boolean operation | for & in success evaluation
12276452eb75
·Matthieu Boubat (lbovenus) on Jun 4 2021, 15:27.
refactor: extract and format methods
e1eeea14b292
·Matthieu Boubat (lbovenus) on Jun 4 2021, 15:25.
refactor rewrite Glenoid to follow new methods structure
efedae91716f
·Matthieu Boubat (lbovenus) on Jun 4 2021, 14:17.
refactor: rewrite Humerus to follow new methods structure
1f2b900a63c7
·Matthieu Boubat (lbovenus) on Jun 4 2021, 14:02.
refactor: extract method
0186d859aedd
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
refactor: rename and reduce method scope
6c263c1c1a91
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
refactor: extract and clean methods
427af013b751
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
refactor: change method call order
b06c5c72347f
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
refactor: add output success argument
219d1d7ece6c
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
refactor: update method name
525d3a0b82c4
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
feat: add emptiness check for scapula and shoulder
b174c68a2103
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
fix: rename abstract method to abide by the new implementation
35de437afb0f
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
refactor: rename measure() to measureFirst()
a47b7a62a073
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
refactor: organise Glenoid methods
18b77e286593
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
refactor: rename method
78d17b84ff5c
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
refactor: rename method, output arguments, create morphology and measure methods
942e6d6ce350
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
refactor: write object methods in separate files
d0cc46351ea7
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
refactor: simplify objects constructor
0fe4702f8808
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
refactor: remove the need for two child classes and update utilisation
2c2b3728cbfc
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
refactor: change object name and move it to utils
f1573e653332
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
feat: add left and right shoulders as SCase properties
bf44e1088b42
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.

Jun 1 2021

refactor: Change concatenation for table outer join.
a69e46bd180b
·boubat / Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
feat: Export two different rows for auto/manual SCase data.
1cb19cfdc519
·boubat / Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
refactor: Remove extra '_' in some variable names.
29871e28c498
·boubat / Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
feat: Improve infinite recursion loop safeguard to any level of nested…
a3d392569110
·Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
doc: Remove typo in docstring.
91285749c26b
·Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
refactor: Change export function name and implementation.
6fe191783718
·Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
doc: Add docstring and update comments.
c8a2431e9c9b
·Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
feat: Add recursion and arguments parser.
a34105a3c73b
·Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
refactor: Finish implementation of objects tabulation function.
3390335c7340
·Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
refactor: Prevent forbiden table column name starting with '_'.
5287912fb246
·Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
feat:WIP Add functions to automatically tabulate properties of any given object.
e606f6705785
·Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.

May 20 2021

fix: Fix char/string bad mixing.
40a669da7e26
·Matthieu Boubat (lbovenus) on May 20 2021, 16:52.
refactor: Remove deprecated classes and move general purpose classes to the…
71604e1d9392
·boubat on May 20 2021, 16:11.
refactor: Update config extraction method across system.
c99e6574cba5
·boubat on May 20 2021, 15:28.
refactor: Uncomment out the filtering of dicom volume.
5f7d12c9d877
·Matthieu Boubat (lbovenus) on May 20 2021, 13:07.

May 19 2021

feat: Allow to load multiple SCases from a list of SCaseID.
824eabc2dc38
·Matthieu Boubat (lbovenus) on May 19 2021, 14:15.
refactor: Adapt pixel coordinates transformation for left side shoulder.
47e03f89908c
·Matthieu Boubat (lbovenus) on May 19 2021, 14:00.

May 7 2021

refactor: Update methods to take into account new file names containing…
c972dfcc3ad1
·Matthieu Boubat (lbovenus) on May 7 2021, 13:12.

May 5 2021

fix: Fix wrong methods and properties names.
35a68cd60da1
·Matthieu Boubat (lbovenus) on May 5 2021, 18:29.
refactor: Change slice size and position.
1e234606ba89
·Matthieu Boubat (lbovenus) on May 5 2021, 18:09.
refactor: Make auto scapula data loading prioritize current shoulder side.
64c30663f9ab
·boubat on May 5 2021, 17:46.
feat: Add methods that bundle several submethods.
460092f903be
·boubat on May 5 2021, 17:44.
refactor: Extract amira/slicer data loading methods from general load method.
fca61af81212
·boubat on May 5 2021, 17:05.
refactor: Change char arrays for strings.
518851eaf0c0
·boubat on May 5 2021, 17:04.
refactor: Change legend location of rotator cuff segmentations 2D plot.
8ca3dd3334e9
·boubat on May 5 2021, 16:52.
feat: Add Teres Minor humeral head insertion and force influence on antero…
46649b7ec7f4
·boubat on May 5 2021, 16:51.

Apr 28 2021

feat: Add rotator cuff muscles centroid plot to segmentations plot.
7a96744b4d4e
·boubat on Apr 28 2021, 12:49.
feat: Add gaussian filter for hard kernel CT scans.
896a4ab346a3
·boubat on Apr 28 2021, 11:32.

Apr 23 2021

refactor: Change muscle force vector to represent muscular activation.
c749ea4a43ec
·boubat on Apr 23 2021, 13:41.

Apr 21 2021

feat: Add method to export humeral head fitted sphere to .ply file.
b523d4a048f5
·boubat on Apr 21 2021, 16:17.
feat: Add method to export a Sphere to .ply file thanks to BinarySphere.
ec80aabdeaff
·boubat on Apr 21 2021, 16:16.
feat: Add method to find new 3DSlicer folder of SCase.
6c84779ab0bc
·boubat on Apr 21 2021, 16:15.
feat: Add method to load humerus landmakrs from 3DSlicer markups files.
16f1b22821e2
·boubat on Apr 21 2021, 16:14.
refactor: Remove disposable argument and fix char/string concatenation.
e5cc35f4bed9
·boubat on Apr 21 2021, 14:19.
refactor: Remove deprecated property.
90907cc260b3
·boubat on Apr 21 2021, 14:17.

Apr 16 2021

refactor: Change shoulder.muscles for shoulder.rotatorCuff.
47c2d59842b9
·boubat on Apr 16 2021, 16:17.
fix: Fix char/string issue.
fb2909401cda
·boubat on Apr 16 2021, 16:15.
refactor: Divide measure method into three.
afa310747b4f
·boubat on Apr 16 2021, 15:41.
feat: Add measurement of rotator cuff antero-posterior imbalance angle.
bab625d091e5
·boubat on Apr 16 2021, 15:24.
refactor: Make plot method ShoulderCasePlotter compliant.
eb0fc6f6f92a
·boubat on Apr 16 2021, 14:23.
fix: Add missing coefficient.
bed4780af6f2
·boubat on Apr 16 2021, 12:25.
feat: Add muscle measurement of insertion and force vector.
02ce2d5800e0
·boubat on Apr 16 2021, 12:24.
feat: Add Humerus plot method.
5eff374d8477
·boubat on Apr 16 2021, 10:43.
feat: Add plot methods to RotatorCuff.
04648c7bb765
·boubat on Apr 16 2021, 10:18.

Apr 15 2021

fix: Change variable names.
1356f5320c27
·Matthieu Boubat (lbovenus) on Apr 15 2021, 19:39.
feat: Implement RotatorCuff object and add it to Shoulder.
490ef61530c7
·boubat on Apr 15 2021, 19:22.

R8218/ShoulderCasemasterc184a141308b4ddb75a63f7…

Jun 10 2021

Jun 7 2021

Jun 4 2021

Jun 1 2021

May 20 2021

May 19 2021

May 7 2021

May 5 2021

Apr 28 2021

Apr 23 2021

Apr 21 2021

Apr 16 2021

Apr 15 2021

R8218/ShoulderCase
masterc184a141308b4ddb75a63f7…