fixes format issues and adds sanity check if roiset is present but not VSI file

fixes display mode for LUT setting

changes condition to check for anything other than a shortprocessor

adds rescaling factor for 32-bit images and distinguishes 8 bit images too if…

corrects a bug where LUT anc BC were using Composite mode for the images

fixes compositing to LUT selection and application

fixes issue where images could be multichannel and not composite

fixes the autogenerated name of the getzProjectionMethod

tries to speed up unmixing avoiding using Jama

fixes a logical error where channel and fluorophore were inverted!

adds display range correction

First commit

adds the possibility to select fubfields

fixes typos

adds new way to handle exporting selected channels and timepoints

combines updates to cope with variables erroneously defined as Long

adds internal setting to fix VSO Bioformats C<->Z bug

Merge branch 'master' of https://c4science.ch/diffusion/944/ijab-vsi-reader

New location

Adds documentation explaining recent fixes fixes a bug where ROI export no…

Update following manuscript revision

Fixes an error where images could be 32-bit (digital phase), so it converts…

fixes an issue where if a channel is missing, the script would copy the next…

fixes a bug where a constant was incorrect.

adds bugfixes and pom version bump

changes default output directory to DEVILS

creates a new 'Save Directory' field in the dialog

Updates POM and jar location

Modifies menu location

Updates DEVILS location in ImageJ's menu

Fixes POM and the old presence of the coloc Plugin

Updates the location of the ActionBar

Update pom and git

Moves the ActionBar to the its new location

Moves the ActionBar to a new location, see plugins.config

fixes location of script in fiji folder hierarchy

Fixes an issue with the Z Projector ignoring timepoints

fixes a bug reported on the imageJ forum

Removes the need for user intervention with CZI files (Deactivating AutoStitch)

Making sure SNAPSHOT is removed again

Changes order of image dimension names for final file

adds text corrections

Add Readme.md

Updates the way we read the series using ImportProcess

first commit

Adds documentation explaining recent fixes

Fixes thumbnail images being left open after the Extract All Command

changes menu entry name from VSI Reader to BIOP VSI Reader

fixes location of ijm file during debugging

adds better support for VSI files with different imaging modalities

Updates the name of the tool in ImageJ and adds contact URL

Decision to Separate Channel Tools from Common Tools

fixes an issue with WingJ spots creation and the new version of EasyXT

fixes an issue with Imaris 8+ where Spot IDs are no longer continuous

Update to EasyXT

creates the first distributed version of the ActionBar

adds more comments to the code and some text output during processing

Merge branch 'wingj' of https://c4science.ch/diffusion/1417/xt-clustering into…

adds minor text edits and small correction to cluster names

Mavenized project further

Allows the user to select a single channel, z slice and/or timepoint to export

quick bugfix and fixed line spacings

Fixes wrong number of threads calculated

Bumping documentation and version number

Fixes issue with file export by the Operetta

Adds dimension check to avoid case where there would be only 1c, 1z and 1t.

first series of fixes

Fixes WingJ import names and columns in the final table to better reflect…

Naming convention modifications to make more sense of the data

Updated with new class for metadata. Manages to save either full tiles or…

Fixes issue when not saving with scaling factor

Adds the possibility to extract one ROI from the tile

Revamping interface and adding updated protocol

Documentation and removal of useless file

Documentation and old code removed

Multiple changes

adds GUI for selecting wells to process, new dependency schanges to script for…

Moved to repository

Adds Remove Empty Clusters Functionality

Moved file

Fixes reassignment text logic