Diffusion BIOP Run Macro (master) History

History
master7f32ca9bdf5096fc3ae0844…

Aug 30 2015

change IJ.write to IJ.log
7f32ca9bdf50
·daniel j. white on Aug 30 2015, 16:05.
add project url and issue management system info
d9be7873e104
·daniel j. white on Aug 30 2015, 16:05.
Fix comments and comments formatting and names
79a72adc5c33
·daniel j. white on Aug 30 2015, 16:05.
remove unused imports
dcec3ea94c80
·daniel j. white on Aug 30 2015, 16:05.
A second unit test for Manders' coefficients
5610ed689846
·daniel j. white on Aug 30 2015, 16:04.
PDFWriter file name: uses maskHash so remove "mask"
f83fb54e445e
·daniel j. white on Aug 30 2015, 16:04.
use a job name with the mask hash for results naming
fc2457b0af79
·daniel j. white on Aug 30 2015, 15:49.
write coloc job name at top of PDF output
d2734712c33c
·daniel j. white on Aug 30 2015, 15:49.
Coloc jobName; a ValueResult for use in ResultHandler implementations
4afd70fd2b78
·daniel j. white on Aug 30 2015, 15:49.
Remove old stale comments and fix comment typo
83bee3b0d009
·daniel j. white on Aug 30 2015, 15:49.
use same job name in all ResultHandlers
a7dafc9e9781
·daniel j. white on Aug 30 2015, 15:49.
Add main class to make development easier
43e1393cf017
·Tom Kazimiers / daniel j. white on Aug 30 2015, 15:49.
change autothreshold test to y-intercept:ch2Mean
c81b5edff10e
·daniel j. white on Aug 30 2015, 15:49.
fix macro recordability - remove " " from gd label
c4ef70887e3e
·daniel j. white on Aug 30 2015, 15:49.
input image stats/params/vals now in DataContainer
64cbd07c0f3a
·daniel j. white on Aug 30 2015, 15:49.
fix duplicated results writing into IJ.log
2d6ecf0b0f6e
·daniel j. white on Aug 30 2015, 15:48.
Tidy up comments and fix to be more specific
d84174a27a50
·daniel j. white on Aug 30 2015, 15:36.
UI: make regression type selection work with macros
dc9deb654875
·Tom Kazimiers / daniel j. white on Aug 30 2015, 15:36.
Create README.md
735f17f686a4
·dan white / daniel j. white on Aug 30 2015, 15:36.
explanation comments, variables fraction coloc
5ee6f4319d10
·daniel j. white on Aug 30 2015, 15:36.
fix typo: Real nouns have capitals
82647666855b
·daniel j. white on Aug 30 2015, 15:30.
Rename objects and fix comments and javadoc
d2ea4bfadbed
·daniel j. white on Aug 30 2015, 15:29.
Fix Manders' split coefficients wrong channel check bug
e4a3a6ec36e0
·daniel j. white on Aug 30 2015, 15:28.

Jul 29 2015

Merge pull request #5 from tomka/add-costes-auto-threshold-alternative
56656007f1a2
·Tom Kazimiers on Jul 29 2015, 04:11.
Fix naming of bisection stepper
646d38da33d4
·Tom Kazimiers on Jul 29 2015, 03:59.

Feb 26 2015

Bump to next development cycle
62fa69d9a4c6
·Mark Hiner on Feb 26 2015, 15:52.
Bump to pom-fiji 7.1.0
fa3d11b13160
·Mark Hiner on Feb 26 2015, 15:50.

Feb 12 2015

Remove some unused imports
cce08cb8458d
·Tom Kazimiers on Feb 12 2015, 15:53.
Add original threshold regression of Costes
8c5e587512a5
·Tom Kazimiers on Feb 12 2015, 15:51.
Support text values in result handlers
e6ee043b3161
·Tom Kazimiers on Feb 12 2015, 15:46.

Feb 4 2015

Add stepper classes for different threshold walking patterns
0c86d3c24329
·Tom Kazimiers on Feb 4 2015, 23:36.

Jan 27 2015

Auto threshold regression: fix comment
f890be035206
·Tom Kazimiers on Jan 27 2015, 15:43.
Auto threshold regression: waslk channel two if slope below -1
4c7d570aff5b
·Tom Kazimiers on Jan 27 2015, 14:44.
Merge pull request #4 from tomka/make-auto-threshold-commutative
98c617cd5897
·Curtis Rueden on Jan 27 2015, 09:37.
Make auto threshold regression commutative wrt. channels
863fdbeaf778
·Tom Kazimiers on Jan 27 2015, 05:52.
Auto threshold regression: change comment slightly (minor)
5e8524b55543
·Tom Kazimiers on Jan 27 2015, 04:35.

Jan 25 2015

Add test for commutativity of the auto thresholding regression
15bd1cc7a89e
·Tom Kazimiers on Jan 25 2015, 03:08.
Fix some image data type variable initializations
52fb5c96d019
·Tom Kazimiers on Jan 25 2015, 03:06.

Jan 20 2015

Merge pull request #3 from tomka/refactor-data-type-range-checks
d6d44740f15c
·dscho on Jan 20 2015, 15:01.
Auto threshold regression: refactor type range checks
f9200259a8bf
·Tom Kazimiers on Jan 20 2015, 13:38.
Merge pull request #2 from tomka/fix-tests
7503d311ba3b
·dscho on Jan 20 2015, 10:22.
Fix mask creation test by initializing mask with correct dimensions
09c46ce81306
·Tom Kazimiers on Jan 20 2015, 04:24.
Move test data into Maven's test resouces folder
afb9a8450f59
·Tom Kazimiers on Jan 20 2015, 04:06.

Dec 18 2014

Bump to latest pom-fiji
310097f9fc35
·Mark Hiner on Dec 18 2014, 20:45.

Dec 11 2014

Bump to latest pom-fiji
9a651794d4d1
·Mark Hiner on Dec 11 2014, 18:47.

Nov 14 2014

Bump to pom-fiji 5.1
51deb5237fa0
·Mark Hiner on Nov 14 2014, 21:11.

Nov 11 2014

Bump to next development cycle
6705f7e6c672
·Curtis Rueden on Nov 11 2014, 00:00.
POM: bump to pom-fiji 5.0.3
cb3bbbacb6a1
·Curtis Rueden on Nov 11 2014, 00:00.

Nov 6 2014

POM: bump to pom-fiji 5.0.2
0f5df781ee6b
·Curtis Rueden on Nov 6 2014, 21:14.
POM: tidy up order of configuration blocks
5d9aef125f45
·Curtis Rueden on Nov 6 2014, 04:58.
POM: bump to pom-fiji 5.0
af6eace721a8
·Curtis Rueden on Nov 6 2014, 04:58.

Nov 5 2014

POM: tweak repositories comment
d135b0beb067
·Curtis Rueden on Nov 5 2014, 23:03.
Organize imports
58a8f73c12c8
·Curtis Rueden on Nov 5 2014, 20:23.

Sep 17 2014

Bump to next release cycle
d4d70d7b3464
·Johannes Schindelin on Sep 17 2014, 13:12.
Publish first release version
b14e4c98b4f2
·Johannes Schindelin on Sep 17 2014, 13:12.
Bump the parent to its first release version
c0da11ddfee8
·Johannes Schindelin on Sep 17 2014, 13:12.

Jul 16 2014

POM: rely on managed versions
ea91e347a797
·Curtis Rueden on Jul 16 2014, 19:52.

Jul 15 2014

POM: fix dependency versions
17eba9dfaa2c
·Curtis Rueden on Jul 15 2014, 23:00.

May 17 2014

Let pom-imagej manage which ImageJ 1.x version we use
61f50c9e7765
·Johannes Schindelin on May 17 2014, 01:15.

Apr 17 2014

Do not expect parent pom.xml in parent directory
ea3be3f06002
·Johannes Schindelin on Apr 17 2014, 23:16.

Apr 15 2014

ImgLib2-ij is versioned independently of ImgLib2 now
3d9aa05d33e5
·Johannes Schindelin on Apr 15 2014, 17:26.

Apr 14 2014

Add missing CI information
7ff3b6676eba
·Curtis Rueden on Apr 14 2014, 20:45.

Mar 14 2014

Merge pull request #1 from tomka/prevent-threshold-overflow
0bee4e207271
·dscho on Mar 14 2014, 19:39.
Make sure calculated thresholds fit into image data type
5f6dd6d91250
·Tom Kazimiers on Mar 14 2014, 18:51.

Feb 11 2014

Mark first commit as external plugin
c796821c2a68
·Johannes Schindelin on Feb 11 2014, 22:11.
Add a .gitignore file
d137288f70c5
·Johannes Schindelin on Feb 11 2014, 22:11.
Add a <developers> section
093717308f3b
·Johannes Schindelin on Feb 11 2014, 22:09.
Use pom-fiji as parent project
48f44f82f1c0
·Johannes Schindelin on Feb 11 2014, 22:06.
Add SCM location
fec819eef5a2
·Johannes Schindelin on Feb 11 2014, 22:06.
Merge pull request #69 from chalkie666/master
4fa48523f776
·dscho on Feb 11 2014, 16:09.
Coloc 2: fix flawed bin width calculation
8be1045451c8
·Johannes Schindelin on Feb 11 2014, 02:29.
Coloc 2: make it easier to apply interactive test to custom images
d74e95eaa8e2
·Johannes Schindelin on Feb 11 2014, 02:29.
Kendall Tau: avoid integer overflow
37db684dbfba
·Johannes Schindelin on Feb 11 2014, 02:29.
Add Kendall Tau to the default methods in the interactive Coloc2 test
c4ccfcea8d72
·Johannes Schindelin on Feb 11 2014, 02:28.

Feb 9 2014

send coloc numerical results to IJ.log for scraping batch results
045f6f05cc40
·chalkie666 on Feb 9 2014, 21:27.
get image names and use them in output
c7e2d6137192
·chalkie666 on Feb 9 2014, 21:04.
bug fix channel names
c2998e967d30
·chalkie666 on Feb 9 2014, 20:25.
fix channel names bug
2252daa0e0b0
·chalkie666 on Feb 9 2014, 20:22.

Jan 29 2014

Kendall-Tau: add an exhaustive test
a404d37200f8
·Johannes Schindelin on Jan 29 2014, 20:51.
Use the fast Kendall Tau-b algorithm instead of the naive one
2e678fa6501a
·Johannes Schindelin on Jan 29 2014, 20:51.
Add an efficient implementation of Kendall's Tau-b
a858d5d35bda
·Johannes Schindelin on Jan 29 2014, 20:51.
Add the IntArraySorter class
99a03d970929
·Johannes Schindelin on Jan 29 2014, 20:51.
Add the reset() method to the PairIterator
01cbead625dc
·Johannes Schindelin on Jan 29 2014, 20:51.
Test more conditions of Kendall's Tau-b
2040ac8faae1
·Johannes Schindelin on Jan 29 2014, 20:51.
Add a test for the Kendall Tau-b algorithm
113c0c8bd919
·Johannes Schindelin on Jan 29 2014, 20:51.
Make the TwinCursor a PairIterator
4857bff46b04
·Johannes Schindelin on Jan 29 2014, 20:51.
Use better names than getChannel1 and getChannel2
16242ac2e343
·Johannes Schindelin on Jan 29 2014, 20:51.
Add some documentation to the implementation of Kendall's Tau-b
4a716dc8ffc1
·Johannes Schindelin on Jan 29 2014, 20:51.
Introduce the PairIterator
bfd385030886
·Johannes Schindelin on Jan 29 2014, 20:51.
Coloc 2: Add Kendall's Tau-b rank correlation
b6cdb153456d
·Johannes Schindelin on Jan 29 2014, 20:51.
Add an easily-called interactive test for Coloc 2
4691062f7844
·Johannes Schindelin on Jan 29 2014, 20:51.

Jan 17 2014

POM: simplify repositories blocks
cc0e3d14b45b
·Curtis Rueden on Jan 17 2014, 21:04.

Dec 26 2013

Remove Eclipse-specific annotation processor settings
b12448c1ff84
·Johannes Schindelin on Dec 26 2013, 22:26.
Remove all .factorypath files
d5c076734a8f
·Johannes Schindelin on Dec 26 2013, 20:15.

Sep 5 2013

Remove date stamp comments from Eclipse APT config
25bd9b68a84e
·Curtis Rueden on Sep 5 2013, 22:26.

Aug 18 2013

Specify the version of the iTextPDF dependency in only one place
91432d5277e3
·Johannes Schindelin on Aug 18 2013, 02:55.

Aug 6 2013

Fix mis-merge
61207e537139
·Johannes Schindelin on Aug 6 2013, 04:44.

Aug 2 2013

Fix versions in pom.xml files
c0d8ca6d7610
·Johannes Schindelin on Aug 2 2013, 17:49.
Merge remote-tracking branch 'origin/master' into track-mate
f09fcbe5f88a
·Jean-Yves Tinevez on Aug 2 2013, 11:03.

Jul 24 2013

Colocalization Analysis (unit tests): do not expect test data to be present
18d95da596f3
·Johannes Schindelin on Jul 24 2013, 23:12.

Historymaster7f32ca9bdf5096fc3ae0844…

Aug 30 2015

Jul 29 2015

Feb 26 2015

Feb 12 2015

Feb 4 2015

Jan 27 2015

Jan 25 2015

Jan 20 2015

Dec 18 2014

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Sep 17 2014

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Apr 14 2014

Mar 14 2014

Feb 11 2014

Feb 9 2014

Jan 29 2014

Jan 17 2014

Dec 26 2013

Sep 5 2013

Aug 18 2013

Aug 6 2013

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Jul 24 2013

History
master7f32ca9bdf5096fc3ae0844…