Diffusion lammps (lammm-devel) History

lammps/doc
lammm-devel007f3c66a033805cbc6755f…

Sep 23 2016

update kokkos compilation instructions to use provided preset makefiles
065d35eefa45
·Axel Kohlmeyer on Sep 23 2016, 05:53.
use "make mpi" instead of "make g++" in examples
378524903330
·Axel Kohlmeyer on Sep 23 2016, 05:52.
delete bogus line (how did this get into the docs?)
e18941e865b8
·Axel Kohlmeyer on Sep 23 2016, 05:41.
making more links and anchors consistent and correct errors
c6cebe66c75d
·Axel Kohlmeyer on Sep 23 2016, 04:26.
add an additional explanation to compute XXX/tally docs and fix a typo
08d9792ec854
·Axel Kohlmeyer on Sep 23 2016, 03:46.

Sep 22 2016

Merge branch 'integration' into doc-fixes
c10aa55fc15d
·Axel Kohlmeyer on Sep 22 2016, 15:19.
doc page sync with SVN
b3217218d67b
·Steve Plimpton on Sep 22 2016, 04:54.

Sep 21 2016

correct another broken link in fix ti/spring
2943dd5c12d6
·Axel Kohlmeyer on Sep 21 2016, 01:02.
remove references to docs for fix ti/rs
33d9a55d358f
·Axel Kohlmeyer on Sep 21 2016, 01:01.
correct broken link in updated fix ti/spring docs
5345efb5b87f
·Axel Kohlmeyer on Sep 21 2016, 00:57.
ignore generated files in html folder
9bedb8a1c9cf
·Axel Kohlmeyer on Sep 21 2016, 00:54.
update docs for pair style gauss/cut to document optional per pair cutoff
0d7e4f1e8827
·Axel Kohlmeyer on Sep 21 2016, 00:51.
remvoing doc/html
9ef748bbaaa9
·Steve Plimpton on Sep 21 2016, 00:46.

Sep 20 2016

fix ti/spring for eam/allow and eam/fs
5c37fccf49c2
·Steve Plimpton on Sep 20 2016, 20:10.
new fix ti/spring command, remove fix ti/rs
b9b044e180df
·Steve Plimpton on Sep 20 2016, 18:44.

Sep 17 2016

consolidate ignoring python bytecompiled cache files
aa9fe38c5c97
·Axel Kohlmeyer on Sep 17 2016, 15:50.

Sep 16 2016

comm tiled bug fix
abf05eed6171
·Steve Plimpton on Sep 16 2016, 18:31.

Sep 14 2016

resolved conflicts
2f298951cff2
·Steve Plimpton on Sep 14 2016, 18:22.
HTML update
717e719b8300
·Steve Plimpton on Sep 14 2016, 17:35.
Merge branch 'integration' of github.com:akohlmey/lammps into integration
10b4411d5b8f
·Steve Plimpton on Sep 14 2016, 01:22.
doc updates
c744b23c4c04
·Steve Plimpton on Sep 14 2016, 01:15.
Merge pull request #27 from akohlmey/small-bugfixes
a69e059be324
·sjplimp / GitHub on Sep 14 2016, 01:11.
Merge pull request #26 from rbberger/is_available_feature
dbc548dd8810
·sjplimp / GitHub on Sep 14 2016, 01:10.
added options to compute bond/local
25e518a4f40b
·Steve Plimpton on Sep 14 2016, 01:03.

Sep 13 2016

pair vashishta/table
ed52f9ea5e39
·Steve Plimpton on Sep 13 2016, 22:54.
final version of pair vashishta/table
944289b018a7
·Steve Plimpton on Sep 13 2016, 22:45.
Merge branch 'small-bugfixes' of github.com:akohlmey/lammps into small-bugfixes
51e4a568c9b1
·Axel Kohlmeyer on Sep 13 2016, 20:32.
fix qeq Kokkos bug fix by Stan
a8081d450728
·Steve Plimpton on Sep 13 2016, 18:54.

Sep 11 2016

update html file updated boundary.txt file
e53862ca4a23
·Axel Kohlmeyer on Sep 11 2016, 20:55.
document how using shrink-wrap boundaries can cause lost atoms in parallel
a64eb330e3a2
·Axel Kohlmeyer on Sep 11 2016, 20:48.

Sep 9 2016

update docs for lj/sf/dipole/sf
d70e051ecd7f
·Axel Kohlmeyer on Sep 9 2016, 16:00.
Add updated HTML documentation about new is_available feature category
e27869daf684
·Richard Berger on Sep 9 2016, 11:56.
Add documentation about new is_available feature category
dc0c0ab214d3
·Richard Berger on Sep 9 2016, 11:55.

Sep 8 2016

update html file
956af8cebb2c
·Axel Kohlmeyer on Sep 8 2016, 23:41.
update documentation for vashishta pair style
71eed1d612ab
·Axel Kohlmeyer on Sep 8 2016, 23:20.
Merge remote-tracking branch 'lammps-rw/integration' into vashishta-tabulation
fe581e8ced13
·Axel Kohlmeyer on Sep 8 2016, 22:21.
Merge pull request #24 from rbberger/info_command_styles
b866e0663b9f
·sjplimp / GitHub on Sep 8 2016, 22:16.
Merge pull request #23 from akohlmey/doc-corrections-and-updates
5d0da95a0b6d
·sjplimp / GitHub on Sep 8 2016, 22:15.
Update generated HTML docs of info command
1f901c9b2daa
·Richard Berger on Sep 8 2016, 15:53.
Update docs of info command
79b8f6320d62
·Richard Berger on Sep 8 2016, 15:53.

Sep 7 2016

created vashishta/table variant
43b05a60c70e
·Steve Plimpton on Sep 7 2016, 19:56.
correct internal links for Modify LAMMPS section
0fe7d1d3612c
·Axel Kohlmeyer on Sep 7 2016, 16:13.
correct reference in modify section
346ff4249833
·Axel Kohlmeyer on Sep 7 2016, 16:10.
regenerate html pages with new txt2rst tool
5feedbd8291d
·Axel Kohlmeyer on Sep 7 2016, 16:09.
replace backquote with regular quote and `` + '' with double quote.
44ce6fac4b91
·Axel Kohlmeyer on Sep 7 2016, 14:29.
Update discussion on parallel python packages. There seem to be only two left.
70d6718aa312
·Axel Kohlmeyer on Sep 7 2016, 13:42.
Make formatting and links more consistent and unique
348b677148ce
·Axel Kohlmeyer on Sep 7 2016, 13:41.
Enforce l,ule or l,ole command order for RST
4c783ea3b726
·Richard Berger / Axel Kohlmeyer on Sep 7 2016, 08:16.
Refactored code and escape RST special character '_'
9e8256aeb0b7
·Richard Berger / Axel Kohlmeyer on Sep 7 2016, 08:16.
Escape RST special character '^' and take care of special math cases
925f1bfb6fc9
·Richard Berger / Axel Kohlmeyer on Sep 7 2016, 08:16.
Escape RST special character '*' in final output
3f312244a01d
·Richard Berger / Axel Kohlmeyer on Sep 7 2016, 08:16.
replace :l,ule and :l,ole with :l :ule or :l :ole
55022d126306
·Axel Kohlmeyer on Sep 7 2016, 08:11.
avoid Inline substitution_reference start-string without end-string
0d491d483c23
·Axel Kohlmeyer on Sep 7 2016, 08:10.
correct error message text, sync with source
a31c5073706c
·Axel Kohlmeyer on Sep 7 2016, 04:15.
update colvars library to version 2016-08-19
16607a0132d5
·Axel Kohlmeyer on Sep 7 2016, 03:27.
update colvars to version 2016-08-10
ec2a6b9f0de3
·Axel Kohlmeyer on Sep 7 2016, 03:27.
update manual introduction to represent current status. correct some markup to…
fc2d87830538
·Axel Kohlmeyer on Sep 7 2016, 03:20.
Merge branch 'integration' into doc-corrections-and-updates
1c17b9850056
·Axel Kohlmeyer on Sep 7 2016, 02:19.
Merge remote-tracking branch 'lammps-rw/clean-up-docs-for-sphinx' into clean-up…
ace5dc3c7c9a
·Axel Kohlmeyer on Sep 7 2016, 01:54.
sync with 7Sep16 patch
0252347d43c5
·Steve Plimpton on Sep 7 2016, 01:00.
Merge pull request #20 from akohlmey/lammps-contribute
c9455c90dee3
·sjplimp / GitHub on Sep 7 2016, 00:55.

Sep 6 2016

one more small correction to document recent fix ave/time changes
42db93e1980b
·Axel Kohlmeyer on Sep 6 2016, 22:10.
fix typos
906bd2454318
·Axel Kohlmeyer on Sep 6 2016, 22:03.
update the discussion on how to submit modifications
4f88c7540152
·Axel Kohlmeyer on Sep 6 2016, 22:02.
generate updated html files for corrected .txt files
1a7b04e8a613
·Axel Kohlmeyer on Sep 6 2016, 19:40.
correct link targets
fbc955e5492c
·Axel Kohlmeyer on Sep 6 2016, 19:40.
add pppm/kk and fix reax/c issues
3bb3c1a45c81
·Steve Plimpton on Sep 6 2016, 18:46.

Sep 1 2016

Merge branch 'integration' into vashishta-tabulation
b12ad2cecf64
·Axel Kohlmeyer on Sep 1 2016, 14:25.
mention stable releases
431d1a6dae03
·Axel Kohlmeyer on Sep 1 2016, 08:37.
synchronize LAMMPS developer list with webpage and move ray to "past"
ab84acc2cdfc
·Axel Kohlmeyer on Sep 1 2016, 08:26.
replace :ule,l and :ole,l with :l<br>:ule and :l<br>:ole
fc093a0aab17
·Axel Kohlmeyer on Sep 1 2016, 08:07.
add new commands to lammps.book
5e6dff36e4e1
·Axel Kohlmeyer on Sep 1 2016, 08:01.
generate updated html files for corrected .txt files
7de57ffd94b3
·Axel Kohlmeyer on Sep 1 2016, 06:02.
correct link targets
ff75cf51bb5f
·Axel Kohlmeyer on Sep 1 2016, 06:01.
Merge pull request #17 from akohlmey/small-doc-fixes
fb2c18ee8872
·sjplimp / GitHub on Sep 1 2016, 03:57.
removing searchindex.js
de0036fafd07
·Steve Plimpton on Sep 1 2016, 03:52.
include autogenerated html code
c3c9788dc72c
·Axel Kohlmeyer on Sep 1 2016, 03:49.
Merge branch 'integration' into small-doc-fixes
2abd5ad28ae2
·Axel Kohlmeyer on Sep 1 2016, 03:42.
small changes to doc page
de21cb2cd596
·Steve Plimpton on Sep 1 2016, 00:16.
Merge branch 'core/cpp_exceptions' of https://github.com/rbberger/lammps into…
639ab0fd3e37
·Steve Plimpton on Sep 1 2016, 00:11.
bad file?
6c65af710c01
·Steve Plimpton on Sep 1 2016, 00:10.

Aug 31 2016

corrections for various compute something/chunk examples
29e480ad666c
·Axel Kohlmeyer on Aug 31 2016, 23:31.
sync with SVN
7c01ef57eeb0
·Steve Plimpton on Aug 31 2016, 23:17.
Merge pull request #6 from akohlmey/manifold-doc-update
f89448d73c91
·sjplimp / GitHub on Aug 31 2016, 22:53.
sync w/ SVN
ad879d97dbfe
·Steve Plimpton on Aug 31 2016, 22:29.
Merge branch 'small' into integration
4051aedf2c78
·Steve Plimpton on Aug 31 2016, 21:58.
sync with SVN
ec8b9e21dbb4
·Steve Plimpton on Aug 31 2016, 21:28.
Remove no longer needed generated files in doc
1986eda4d5f1
·Richard Berger on Aug 31 2016, 06:36.
Use Google Custom Search API for searching in docs
e71fafdd256c
·Richard Berger on Aug 31 2016, 06:28.

Aug 28 2016

updated doc build readme for current Fedora and RHEL/CentOS
56d0ab947412
·Axel Kohlmeyer on Aug 28 2016, 20:20.
Merge branch 'integration' into small-bugfixes
f8d6b979ec1a
·Axel Kohlmeyer on Aug 28 2016, 20:16.
Update documentation for tabulation in vashista pair style
cdf06646efc4
·Axel Kohlmeyer on Aug 28 2016, 05:05.
Added documentation about -DLAMMPS_EXCEPTIONS flag
f5a50c3cd1c8
·Richard Berger on Aug 28 2016, 04:13.
sync with SVN
3a1397dc7c36
·Steve Plimpton on Aug 28 2016, 01:11.
Merge pull request #9 from rbberger/remove_sha1sum_dependency
0c2e643062ac
·sjplimp / GitHub on Aug 28 2016, 01:02.
new fix flow/gauss command
c80dad002883
·Steve Plimpton on Aug 28 2016, 00:25.

Aug 26 2016

improved .gitignore files to show only changes in relevant folders and files
9be235d87258
·Axel Kohlmeyer on Aug 26 2016, 20:34.
removal of doc/html/_sources and minor sync with SVN
2beecd1e7351
·Steve Plimpton on Aug 26 2016, 19:34.
Add MacOS X instructions to doc generation README
95aabdf51a96
·Richard Berger on Aug 26 2016, 16:08.
Remove sha1sum dependency for doc generation
ea368919f3b5
·Richard Berger on Aug 26 2016, 06:01.

lammps/doclammm-devel007f3c66a033805cbc6755f…

Sep 23 2016

Sep 22 2016

Sep 21 2016

Sep 20 2016

Sep 17 2016

Sep 16 2016

Sep 14 2016

Sep 13 2016

Sep 11 2016

Sep 9 2016

Sep 8 2016

Sep 7 2016

Sep 6 2016

Sep 1 2016

Aug 31 2016

Aug 28 2016

Aug 26 2016

lammps/doc
lammm-devel007f3c66a033805cbc6755f…