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Merge remote-tracking branch 'lammps-rw/integration' into vashishta-tabulation

Authored by Axel Kohlmeyer <akohlmey@gmail.com> on Sep 8 2016, 22:21.

Description

Merge remote-tracking branch 'lammps-rw/integration' into vashishta-tabulation

Event Timeline

Axel Kohlmeyer <akohlmey@gmail.com> committed rLAMMPSfe581e8ced13: Merge remote-tracking branch 'lammps-rw/integration' into vashishta-tabulation (authored by Axel Kohlmeyer <akohlmey@gmail.com>).Sep 8 2016, 22:21

Merged Changes

This commit merges a very large number of changes. Only the first 50 are shown.
CommitAuthorDetailsCommitted
b866e0663b9fsjplimp/GitHub
Merge pull request #24 from rbberger/info_command_styles 
Sep 8 2016
5d0da95a0b6dsjplimp/GitHub
Merge pull request #23 from akohlmey/doc-corrections-and-updates 
Sep 8 2016
07e55ef61e7dsjplimp/GitHub
Merge pull request #22 from akohlmey/colvars-update 
Sep 8 2016
236ebf7fabbbSteve Plimpton
Kokkos lib update 
Sep 8 2016
1f901c9b2daaRichard Berger
Update generated HTML docs of info command 
Sep 8 2016
79b8f6320d62Richard Berger
Update docs of info command 
Sep 8 2016
2dcfb51d1807Richard Berger
Change info command styles syntax 
Sep 8 2016
ba2b523bf4b7Richard Berger
Use factory for region style creation 
Sep 8 2016
fd2b88642278Richard Berger
Use factory for dump style creation 
Sep 8 2016
9952d8a210fcRichard Berger
Use factory for minimize style creation 
Sep 8 2016
85c132943ed5Richard Berger
Use factory for integrate style creation 
Sep 8 2016
55260ad53e5bRichard Berger
Add missing delete in destructor 
Sep 8 2016
a1e5fc0fca8fRichard Berger
Use factory for AtomVec style creation 
Sep 8 2016
88e10b401d5eRichard Berger
Cleanup force.h after refactoring 
Sep 8 2016
1d03913aa307Richard Berger
Use factory for kspace style creation 
Sep 8 2016
0745a9f33f41Richard Berger
Use factory for improper style creation 
Sep 8 2016
906c50223af6Richard Berger
Use factory for dihedral style creation 
Sep 8 2016
35bdeb63e266Richard Berger
Use factory for angle style creation 
Sep 8 2016
69c58ef0d5dfRichard Berger
Use factory for bond style creation 
Sep 8 2016
95ee6440add0Richard Berger
Use pair_map to list pair styles 
Sep 8 2016
00b08bb5e1feRichard Berger
Use compute_map and fix_map to list compute and fix styles 
Sep 8 2016
e483cb9ef977Richard Berger
Use command_map to list command styles 
Sep 8 2016
06e3a11c2dd5Richard Berger
Add styles output to info command 
Sep 8 2016
0fe7d1d3612cAxel Kohlmeyer
correct internal links for Modify LAMMPS section 
Sep 7 2016
346ff4249833Axel Kohlmeyer
correct reference in modify section 
Sep 7 2016
5feedbd8291dAxel Kohlmeyer
regenerate html pages with new txt2rst tool 
Sep 7 2016
44ce6fac4b91Axel Kohlmeyer
replace backquote with regular quote and `` + '' with double quote. 
Sep 7 2016
70d6718aa312Axel Kohlmeyer
Update discussion on parallel python packages. There seem to be only two left. 
Sep 7 2016
348b677148ceAxel Kohlmeyer
Make formatting and links more consistent and unique 
Sep 7 2016
4c783ea3b726Richard Berger/Axel Kohlmeyer
Enforce l,ule or l,ole command order for RST 
Sep 7 2016
9e8256aeb0b7Richard Berger/Axel Kohlmeyer
Refactored code and escape RST special character '_' 
Sep 7 2016
925f1bfb6fc9Richard Berger/Axel Kohlmeyer
Escape RST special character '^' and take care of special math cases 
Sep 7 2016
3f312244a01dRichard Berger/Axel Kohlmeyer
Escape RST special character '*' in final output 
Sep 7 2016
55022d126306Axel Kohlmeyer
replace :l,ule and :l,ole with :l :ule or :l :ole 
Sep 7 2016
0d491d483c23Axel Kohlmeyer
avoid Inline substitution_reference start-string without end-string 
Sep 7 2016
a31c5073706cAxel Kohlmeyer
correct error message text, sync with source 
Sep 7 2016
3a74ccffa2edAxel Kohlmeyer
update colvars library to version 2016-09-03 
Sep 7 2016
c8cfd53c1b86Axel Kohlmeyer
adjust makefiles in lib tree, so they don't return an error exit code on "make… 
Sep 7 2016
16607a0132d5Axel Kohlmeyer
update colvars library to version 2016-08-19 
Sep 7 2016
3b476d914f5eAxel Kohlmeyer
update colvars to version 2016-08-10 
Sep 7 2016
977b9e542f5dAxel Kohlmeyer
update colvars to another set of changes from the upstream repo 
Sep 7 2016
1b33d00785b9Axel Kohlmeyer
update colvars makefile dependencies 
Sep 7 2016
3d2e5d0a5031Axel Kohlmeyer
suppress compiler warning 
Sep 7 2016
ec2a6b9f0de3Axel Kohlmeyer
update colvars to version 2016-08-10 
Sep 7 2016
77620106a43eAxel Kohlmeyer
update colvars library to version 2016-08-05 
Sep 7 2016
fc2d87830538Axel Kohlmeyer
update manual introduction to represent current status. correct some markup to… 
Sep 7 2016
1c17b9850056Axel Kohlmeyer
Merge branch 'integration' into doc-corrections-and-updates 
Sep 7 2016
ace5dc3c7c9aAxel Kohlmeyer
Merge remote-tracking branch 'lammps-rw/clean-up-docs-for-sphinx' into clean-up… 
Sep 7 2016
0252347d43c5Steve Plimpton
sync with 7Sep16 patch 
Sep 7 2016
c9455c90dee3sjplimp/GitHub
Merge pull request #20 from akohlmey/lammps-contribute 
Sep 7 2016