Diffusion lammps (master) History

lammps/doc
master67d4c07689a357476ef0b3e…

Sep 27 2016

Do not escape underscore inside preformat blocks
67d4c07689a3
·Richard Berger on Sep 27 2016, 00:52.
Fix typo in Section_howto.txt
877a5049332e
·Richard Berger on Sep 27 2016, 00:44.

Sep 26 2016

Fix broken link in Section_packages.txt
d0aa13b5431c
·Richard Berger on Sep 26 2016, 22:53.
new fix cmap command
b97b9dd66188
·Steve Plimpton on Sep 26 2016, 16:40.

Sep 23 2016

Merge pull request #41 from akohlmey/doc-fixes
c00cd6192d9c
·sjplimp / GitHub on Sep 23 2016, 22:57.
sync with SVN
6f4b7268ded6
·Steve Plimpton on Sep 23 2016, 22:52.
a few more consolidations of link anchors
3d5f5bf40e58
·Axel Kohlmeyer on Sep 23 2016, 16:25.
update kokkos compilation instructions to use provided preset makefiles
065d35eefa45
·Axel Kohlmeyer on Sep 23 2016, 05:53.
use "make mpi" instead of "make g++" in examples
378524903330
·Axel Kohlmeyer on Sep 23 2016, 05:52.
delete bogus line (how did this get into the docs?)
e18941e865b8
·Axel Kohlmeyer on Sep 23 2016, 05:41.
making more links and anchors consistent and correct errors
c6cebe66c75d
·Axel Kohlmeyer on Sep 23 2016, 04:26.
add an additional explanation to compute XXX/tally docs and fix a typo
08d9792ec854
·Axel Kohlmeyer on Sep 23 2016, 03:46.

Sep 22 2016

Merge branch 'integration' into doc-fixes
c10aa55fc15d
·Axel Kohlmeyer on Sep 22 2016, 15:19.
doc page sync with SVN
b3217218d67b
·Steve Plimpton on Sep 22 2016, 04:54.

Sep 21 2016

correct another broken link in fix ti/spring
2943dd5c12d6
·Axel Kohlmeyer on Sep 21 2016, 01:02.
remove references to docs for fix ti/rs
33d9a55d358f
·Axel Kohlmeyer on Sep 21 2016, 01:01.
correct broken link in updated fix ti/spring docs
5345efb5b87f
·Axel Kohlmeyer on Sep 21 2016, 00:57.
ignore generated files in html folder
9bedb8a1c9cf
·Axel Kohlmeyer on Sep 21 2016, 00:54.
update docs for pair style gauss/cut to document optional per pair cutoff
0d7e4f1e8827
·Axel Kohlmeyer on Sep 21 2016, 00:51.
remvoing doc/html
9ef748bbaaa9
·Steve Plimpton on Sep 21 2016, 00:46.

Sep 20 2016

fix ti/spring for eam/allow and eam/fs
5c37fccf49c2
·Steve Plimpton on Sep 20 2016, 20:10.
new fix ti/spring command, remove fix ti/rs
b9b044e180df
·Steve Plimpton on Sep 20 2016, 18:44.

Sep 17 2016

consolidate ignoring python bytecompiled cache files
aa9fe38c5c97
·Axel Kohlmeyer on Sep 17 2016, 15:50.

Sep 16 2016

comm tiled bug fix
abf05eed6171
·Steve Plimpton on Sep 16 2016, 18:31.

Sep 14 2016

resolved conflicts
2f298951cff2
·Steve Plimpton on Sep 14 2016, 18:22.
HTML update
717e719b8300
·Steve Plimpton on Sep 14 2016, 17:35.
Merge branch 'integration' of github.com:akohlmey/lammps into integration
10b4411d5b8f
·Steve Plimpton on Sep 14 2016, 01:22.
doc updates
c744b23c4c04
·Steve Plimpton on Sep 14 2016, 01:15.
Merge pull request #27 from akohlmey/small-bugfixes
a69e059be324
·sjplimp / GitHub on Sep 14 2016, 01:11.
Merge pull request #26 from rbberger/is_available_feature
dbc548dd8810
·sjplimp / GitHub on Sep 14 2016, 01:10.
added options to compute bond/local
25e518a4f40b
·Steve Plimpton on Sep 14 2016, 01:03.

Sep 13 2016

pair vashishta/table
ed52f9ea5e39
·Steve Plimpton on Sep 13 2016, 22:54.
final version of pair vashishta/table
944289b018a7
·Steve Plimpton on Sep 13 2016, 22:45.
Merge branch 'small-bugfixes' of github.com:akohlmey/lammps into small-bugfixes
51e4a568c9b1
·Axel Kohlmeyer on Sep 13 2016, 20:32.
fix qeq Kokkos bug fix by Stan
a8081d450728
·Steve Plimpton on Sep 13 2016, 18:54.

Sep 11 2016

update html file updated boundary.txt file
e53862ca4a23
·Axel Kohlmeyer on Sep 11 2016, 20:55.
document how using shrink-wrap boundaries can cause lost atoms in parallel
a64eb330e3a2
·Axel Kohlmeyer on Sep 11 2016, 20:48.

Sep 9 2016

update docs for lj/sf/dipole/sf
d70e051ecd7f
·Axel Kohlmeyer on Sep 9 2016, 16:00.
Add updated HTML documentation about new is_available feature category
e27869daf684
·Richard Berger on Sep 9 2016, 11:56.
Add documentation about new is_available feature category
dc0c0ab214d3
·Richard Berger on Sep 9 2016, 11:55.

Sep 8 2016

update html file
956af8cebb2c
·Axel Kohlmeyer on Sep 8 2016, 23:41.
update documentation for vashishta pair style
71eed1d612ab
·Axel Kohlmeyer on Sep 8 2016, 23:20.
Merge remote-tracking branch 'lammps-rw/integration' into vashishta-tabulation
fe581e8ced13
·Axel Kohlmeyer on Sep 8 2016, 22:21.
Merge pull request #24 from rbberger/info_command_styles
b866e0663b9f
·sjplimp / GitHub on Sep 8 2016, 22:16.
Merge pull request #23 from akohlmey/doc-corrections-and-updates
5d0da95a0b6d
·sjplimp / GitHub on Sep 8 2016, 22:15.
Update generated HTML docs of info command
1f901c9b2daa
·Richard Berger on Sep 8 2016, 15:53.
Update docs of info command
79b8f6320d62
·Richard Berger on Sep 8 2016, 15:53.

Sep 7 2016

created vashishta/table variant
43b05a60c70e
·Steve Plimpton on Sep 7 2016, 19:56.
correct internal links for Modify LAMMPS section
0fe7d1d3612c
·Axel Kohlmeyer on Sep 7 2016, 16:13.
correct reference in modify section
346ff4249833
·Axel Kohlmeyer on Sep 7 2016, 16:10.
regenerate html pages with new txt2rst tool
5feedbd8291d
·Axel Kohlmeyer on Sep 7 2016, 16:09.
replace backquote with regular quote and `` + '' with double quote.
44ce6fac4b91
·Axel Kohlmeyer on Sep 7 2016, 14:29.
Update discussion on parallel python packages. There seem to be only two left.
70d6718aa312
·Axel Kohlmeyer on Sep 7 2016, 13:42.
Make formatting and links more consistent and unique
348b677148ce
·Axel Kohlmeyer on Sep 7 2016, 13:41.
Enforce l,ule or l,ole command order for RST
4c783ea3b726
·Richard Berger / Axel Kohlmeyer on Sep 7 2016, 08:16.
Refactored code and escape RST special character '_'
9e8256aeb0b7
·Richard Berger / Axel Kohlmeyer on Sep 7 2016, 08:16.
Escape RST special character '^' and take care of special math cases
925f1bfb6fc9
·Richard Berger / Axel Kohlmeyer on Sep 7 2016, 08:16.
Escape RST special character '*' in final output
3f312244a01d
·Richard Berger / Axel Kohlmeyer on Sep 7 2016, 08:16.
replace :l,ule and :l,ole with :l :ule or :l :ole
55022d126306
·Axel Kohlmeyer on Sep 7 2016, 08:11.
avoid Inline substitution_reference start-string without end-string
0d491d483c23
·Axel Kohlmeyer on Sep 7 2016, 08:10.
correct error message text, sync with source
a31c5073706c
·Axel Kohlmeyer on Sep 7 2016, 04:15.
update colvars library to version 2016-08-19
16607a0132d5
·Axel Kohlmeyer on Sep 7 2016, 03:27.
update colvars to version 2016-08-10
ec2a6b9f0de3
·Axel Kohlmeyer on Sep 7 2016, 03:27.
update manual introduction to represent current status. correct some markup to…
fc2d87830538
·Axel Kohlmeyer on Sep 7 2016, 03:20.
Merge branch 'integration' into doc-corrections-and-updates
1c17b9850056
·Axel Kohlmeyer on Sep 7 2016, 02:19.
Merge remote-tracking branch 'lammps-rw/clean-up-docs-for-sphinx' into clean-up…
ace5dc3c7c9a
·Axel Kohlmeyer on Sep 7 2016, 01:54.
sync with 7Sep16 patch
0252347d43c5
·Steve Plimpton on Sep 7 2016, 01:00.
Merge pull request #20 from akohlmey/lammps-contribute
c9455c90dee3
·sjplimp / GitHub on Sep 7 2016, 00:55.

Sep 6 2016

one more small correction to document recent fix ave/time changes
42db93e1980b
·Axel Kohlmeyer on Sep 6 2016, 22:10.
fix typos
906bd2454318
·Axel Kohlmeyer on Sep 6 2016, 22:03.
update the discussion on how to submit modifications
4f88c7540152
·Axel Kohlmeyer on Sep 6 2016, 22:02.
generate updated html files for corrected .txt files
1a7b04e8a613
·Axel Kohlmeyer on Sep 6 2016, 19:40.
correct link targets
fbc955e5492c
·Axel Kohlmeyer on Sep 6 2016, 19:40.
add pppm/kk and fix reax/c issues
3bb3c1a45c81
·Steve Plimpton on Sep 6 2016, 18:46.

Sep 1 2016

Merge branch 'integration' into vashishta-tabulation
b12ad2cecf64
·Axel Kohlmeyer on Sep 1 2016, 14:25.
mention stable releases
431d1a6dae03
·Axel Kohlmeyer on Sep 1 2016, 08:37.
synchronize LAMMPS developer list with webpage and move ray to "past"
ab84acc2cdfc
·Axel Kohlmeyer on Sep 1 2016, 08:26.
replace :ule,l and :ole,l with :l<br>:ule and :l<br>:ole
fc093a0aab17
·Axel Kohlmeyer on Sep 1 2016, 08:07.
add new commands to lammps.book
5e6dff36e4e1
·Axel Kohlmeyer on Sep 1 2016, 08:01.
generate updated html files for corrected .txt files
7de57ffd94b3
·Axel Kohlmeyer on Sep 1 2016, 06:02.
correct link targets
ff75cf51bb5f
·Axel Kohlmeyer on Sep 1 2016, 06:01.
Merge pull request #17 from akohlmey/small-doc-fixes
fb2c18ee8872
·sjplimp / GitHub on Sep 1 2016, 03:57.
removing searchindex.js
de0036fafd07
·Steve Plimpton on Sep 1 2016, 03:52.
include autogenerated html code
c3c9788dc72c
·Axel Kohlmeyer on Sep 1 2016, 03:49.
Merge branch 'integration' into small-doc-fixes
2abd5ad28ae2
·Axel Kohlmeyer on Sep 1 2016, 03:42.
small changes to doc page
de21cb2cd596
·Steve Plimpton on Sep 1 2016, 00:16.
Merge branch 'core/cpp_exceptions' of https://github.com/rbberger/lammps into…
639ab0fd3e37
·Steve Plimpton on Sep 1 2016, 00:11.
bad file?
6c65af710c01
·Steve Plimpton on Sep 1 2016, 00:10.

Aug 31 2016

corrections for various compute something/chunk examples
29e480ad666c
·Axel Kohlmeyer on Aug 31 2016, 23:31.
sync with SVN
7c01ef57eeb0
·Steve Plimpton on Aug 31 2016, 23:17.
Merge pull request #6 from akohlmey/manifold-doc-update
f89448d73c91
·sjplimp / GitHub on Aug 31 2016, 22:53.
sync w/ SVN
ad879d97dbfe
·Steve Plimpton on Aug 31 2016, 22:29.
Merge branch 'small' into integration
4051aedf2c78
·Steve Plimpton on Aug 31 2016, 21:58.
sync with SVN
ec8b9e21dbb4
·Steve Plimpton on Aug 31 2016, 21:28.
Remove no longer needed generated files in doc
1986eda4d5f1
·Richard Berger on Aug 31 2016, 06:36.
Use Google Custom Search API for searching in docs
e71fafdd256c
·Richard Berger on Aug 31 2016, 06:28.

Aug 28 2016

updated doc build readme for current Fedora and RHEL/CentOS
56d0ab947412
·Axel Kohlmeyer on Aug 28 2016, 20:20.
Merge branch 'integration' into small-bugfixes
f8d6b979ec1a
·Axel Kohlmeyer on Aug 28 2016, 20:16.
Update documentation for tabulation in vashista pair style
cdf06646efc4
·Axel Kohlmeyer on Aug 28 2016, 05:05.
Added documentation about -DLAMMPS_EXCEPTIONS flag
f5a50c3cd1c8
·Richard Berger on Aug 28 2016, 04:13.

lammps/docmaster67d4c07689a357476ef0b3e…

Sep 27 2016

Sep 26 2016

Sep 23 2016

Sep 22 2016

Sep 21 2016

Sep 20 2016

Sep 17 2016

Sep 16 2016

Sep 14 2016

Sep 13 2016

Sep 11 2016

Sep 9 2016

Sep 8 2016

Sep 7 2016

Sep 6 2016

Sep 1 2016

Aug 31 2016

Aug 28 2016

lammps/doc
master67d4c07689a357476ef0b3e…