Diffusion SpecMiCP / ReactMiCP (master) History

History
masterfe730a86a4bcb821cc54eb5…

Nov 21 2015

impr: add member to compute vapor pressure at a node
fe730a86a4bc
·fabien on Nov 21 2015, 00:48.
fix: fix bad merge in tests/CMakelists
28bff3d604ca
·fabien on Nov 21 2015, 00:45.

Nov 20 2015

Merge branch 'reactmicp/unsaturated' of bitbucket.org:specmicp/specmicp into…
66d0ee73e788
·fabien on Nov 20 2015, 22:52.
fix : unsaturated reactive transport is working ! but slow...
a6c6bddc3c1f
·fabien on Nov 20 2015, 22:49.
feat: use new SaturationPressureEquation in transport stagger
05403a90982d
·fabien on Nov 20 2015, 15:07.
impr: use the template instanciation from equation units in transport stagger
ecdedfed7695
·fabien on Nov 20 2015, 15:07.
feat: add SaturationPressureEquation
9a2ffe1a0437
·fabien on Nov 20 2015, 15:07.
impr: use ValueChecker to check unsaturated variables
6ce35e10c6f3
·fabien on Nov 20 2015, 15:07.
feat: Check values in a vector
d8e2f5ee10ea
·fabien on Nov 20 2015, 15:07.
impr: introduce FV1DOFEquation
276744263d3d
·fabien on Nov 20 2015, 15:05.
fix: fix aqueous transport test initialization
08b1bb05b612
·fabien on Nov 20 2015, 15:05.
doc/test: utils/moving_average.hpp
06bb2ef6e1eb
·fabien on Nov 20 2015, 04:53.
doc/test: timer
bf8793cc25ec
·fabien on Nov 20 2015, 04:04.

Nov 19 2015

impr: use ValueChecker to check unsaturated variables
e999d01cbe20
·fabien on Nov 19 2015, 19:33.
feat: Check values in a vector
3eb65fe1c313
·fabien on Nov 19 2015, 19:33.

Nov 18 2015

impr: introduce FV1DOFEquation
90339a469f5d
·fabien on Nov 18 2015, 15:45.
fix: fix aqueous transport test initialization
96b5ee0af24c
·fabien on Nov 18 2015, 15:28.

Nov 15 2015

fix: export symbols of hdf5 functions
307c69a60f2b
·fabien on Nov 15 2015, 22:36.
fix: fix close/open
8321e658cc93
·fabien on Nov 15 2015, 21:44.
feat: save transport properties as well
3390f8785beb
·fabien on Nov 15 2015, 21:43.
feat: save unsaturated variables
648ee677491f
·fabien on Nov 15 2015, 21:43.
fix: consistent API, name is before section in save_*() in HDF5 format
7d858caaf955
·fabien on Nov 15 2015, 21:43.
feat: save mesh coordinates in hdf5 format
150b8fef3a58
·fabien on Nov 15 2015, 21:43.
Feat: save database labels in HDF5 file
f79a6c9e55fb
·fabien on Nov 15 2015, 21:43.
Fix : HDF5 : Hide implementation symbols
9f2a62399b3d
·fabien on Nov 15 2015, 21:43.
feat: save adimensional system solution in hdf5
28a4bc161e9f
·fabien on Nov 15 2015, 21:43.
feat: write Eigen matrix in hdf5 file
20f512c2959a
·fabien on Nov 15 2015, 21:43.
feat : HDF5File : wrapper around a HDF5 file
8f9891f52ab4
·fabien on Nov 15 2015, 21:43.

Nov 11 2015

Add atmospheric carbonation example
00f606d8ccd8
·fabien on Nov 11 2015, 21:54.
Add openmp support in equilibrium/transport stagger
e56213af5020
·fabien on Nov 11 2015, 21:54.
API of equilibrium/transport staggers
008df9c9036e
·fabien on Nov 11 2015, 21:54.
Fix/correction/improvement of equilibrium stagger
49e681b556ec
·fabien on Nov 11 2015, 21:54.
variables_interface can initialize node with AdimensionnalExtractor
d536fc3e2489
·fabien on Nov 11 2015, 21:54.
impr: AdimensionalExtractor can now return a copy of the solution
f0a961c3d86d
·fabien on Nov 11 2015, 21:54.
Use relative residuals (per equation) in transport stagger
883b66536f20
·fabien on Nov 11 2015, 21:54.
Allow the user to give a scaling factor for the residuals of each equations
c4d70155deca
·fabien on Nov 11 2015, 21:54.
feat: support for a gas diffusivity per species
55a26ac091b1
·fabien on Nov 11 2015, 21:54.
user header files
f046a3fd7c05
·fabien on Nov 11 2015, 20:23.

Oct 26 2015

add EquilibriumStagger to unsaturated system
328860e72934
·fabien on Oct 26 2015, 23:06.
add EquilibriumConstraints to the unsaturated systems
19b14f34e6cc
·fabien on Oct 26 2015, 23:04.
test: fix transport stagger test for gas species management
9635e63245f6
·fabien on Oct 26 2015, 23:03.
impr: variables: doc, gas, chemistry
c61df97b5350
·fabien on Oct 26 2015, 23:02.
doc : some documentations for transport equations and stagger
ed266db573ec
·fabien on Oct 26 2015, 22:55.

Oct 22 2015

impr: add VariablesInterface in unsaturated system
c9febc252301
·fabien on Oct 22 2015, 22:40.

Oct 21 2015

fix: transport stagger and equations for drying stagger
574c04e43124
·fabien on Oct 21 2015, 22:11.
fix : fix transport constraints
137ca1c0b377
·fabien on Oct 21 2015, 22:10.
fix: fix variables for the drying example
b725b3cc80ed
·fabien on Oct 21 2015, 22:09.
example : add drying example for unsaturated system
0b6746b9ec8d
·fabien on Oct 21 2015, 22:05.
feat: add function to obtain scaling factor from a SI unit
0a01808c94b9
·fabien on Oct 21 2015, 22:03.

Oct 14 2015

Transport stagger for unsaturated system
1d28f469e61d
·fabien on Oct 14 2015, 22:03.
Aqueous liquid transport equation (unsaturated)
9de2802aad38
·fabien on Oct 14 2015, 22:03.
Gas diffusion equation (unsaturated)
0faef04ff3bc
·fabien on Oct 14 2015, 22:03.
Saturation Equation (unsaturated)
e96f9ec8af07
·fabien on Oct 14 2015, 22:03.
TransportConstraints : constraints for transport equations
9f400fef0c2a
·fabien on Oct 14 2015, 22:03.
Variables for the unsaturated reactive transport system
4e3d1dd452a3
·fabien on Oct 14 2015, 22:03.
associate numbers with StaggerReturnCode for quick debugguing
a7c86055496b
·fabien on Oct 14 2015, 22:03.
add water viscosity as constants
982e05359269
·fabien on Oct 14 2015, 22:03.
add helper function to check failure of parabolic solver
4f607141ce7f
·fabien on Oct 14 2015, 22:03.
fix: header guard for src/utils/compat.hpp
d577c5f2a2cb
·fabien on Oct 14 2015, 22:03.

Oct 5 2015

test: add tests for physics/laws.hpp
4119d04a2010
·fabien on Oct 5 2015, 19:18.
fix: fix debye-huckel law and tests
284828328b97
·fabien on Oct 5 2015, 04:36.
toolchain: add basic docker image file
f50a198281ba
·fabien on Oct 5 2015, 01:42.

Oct 3 2015

fast: optimize debye-huckel law
386ce7bfa07c
·fabien on Oct 3 2015, 17:28.
add new micro-benchmark for AdimensionalSystem
3c9f0260c8cc
·fabien on Oct 3 2015, 05:14.
fix: fix FindBenchmark.cmake
cfc694b29259
·fabien on Oct 3 2015, 05:14.

Oct 1 2015

Merge branch 'benchmark'
534fab73249d
·fabien on Oct 1 2015, 04:55.
toolchain: micro-benchmark for database container
e7c0f3e0f2c8
·fabien on Oct 1 2015, 04:50.
toolchain: add support for micro-benchmarking
82b1f62aeb2a
·fabien on Oct 1 2015, 04:50.

Sep 29 2015

Merge branch 'specmicp/adim_refactor'
f71e6ee12d35
·fabien on Sep 29 2015, 18:08.
refactor: separe residual water in 2 functions
8eea5f44bc3c
·fabien on Sep 29 2015, 18:08.
fix: re-compute gas scaling factor
bc2979556f46
·fabien on Sep 29 2015, 18:08.
refactor: rename saturation_ -> volume_fraction_ in AdimensionalSystem
fcd797321b23
·fabien on Sep 29 2015, 18:08.
Merge branch 'specmicp/cappressure'
7da7c3430d33
·fabien on Sep 29 2015, 16:20.
refactor: remove AdimensionalSystem header inclusion in solver
4e562635f94b
·fabien on Sep 29 2015, 16:16.
fix: correct functions for volume fraction gas
4f8c2e8a5fc2
·fabien on Sep 29 2015, 16:16.
feature: add water pressure model in specmicp
4bb92b2d2b3f
·fabien on Sep 29 2015, 16:16.

Sep 26 2015

impr: padding in adimensional_system_solution
e1d44a9d9d81
·fabien on Sep 26 2015, 23:53.

Sep 14 2015

refactor: hide default options of AdimensinalSystemOptions
24ef8eadfa0f
·fabien on Sep 14 2015, 23:30.
refactor: adim default options are now in config_*.h file
f0fd4a5cd0ff
·fabien on Sep 14 2015, 23:04.
refactor: move configuration solution output in config_<> file
8f3676bf7899
·fabien on Sep 14 2015, 22:11.
output: add comment in solution files of SpecMiCP
3fe35fdcbd16
·fabien on Sep 14 2015, 21:55.
test: add test for specmicp library
0d462a7bb38b
·fabien on Sep 14 2015, 15:32.
test: move cmake rules for specmicp test
386114bd5e55
·fabien on Sep 14 2015, 15:13.

Sep 9 2015

fix: print the simplified db in specmicp output
7465729f8739
·fabien on Sep 9 2015, 21:37.
fix: correct initialisation of variables in AdimensionalSolver
390c23c8aaee
·fabien on Sep 9 2015, 21:35.
fix: correct parsing of a fix fugacity constraint
e8d5bb01032b
·fabien on Sep 9 2015, 21:34.
database: add more compounds in cemdata
a0d21846cfdb
·fabien on Sep 9 2015, 21:33.

Aug 11 2015

impr: abort solution parsing if metadata are not correct
db7f20a8c8a1
·fabien on Aug 11 2015, 20:55.
cosmetic: remove old code in comment
f75db11b41df
·fabien on Aug 11 2015, 20:54.
cosmetic: remove comments that show up in the TODO list
b9dca64bf78b
·fabien on Aug 11 2015, 20:53.
impr: refactor the clean_label function
51f3d18104e9
·fabien on Aug 11 2015, 20:21.
impr: use pimpl idiom in transprot stagger
87008f18555b
·fabien on Aug 11 2015, 18:16.
test-fix: micpsolver tests must links to the common lib
33abd27298dd
·fabien on Aug 11 2015, 16:59.
impr: flag to use chemistry rate in residual computation
f55d9b72639e
·fabien on Aug 11 2015, 16:49.

Jul 20 2015

fix: logging should now works,
923b00e74e4f
·fabien on Jul 20 2015, 23:01.
fix: correct assertions in adimensional system numbering
1c251fa879ac
·fabien on Jul 20 2015, 23:00.

Jul 17 2015

fix: Correct saturation index sum
5d8f161fb9ba
·fabien on Jul 17 2015, 19:34.
feat: print saturation index in reactmicp output
d8ef5759bebd
·fabien on Jul 17 2015, 16:41.

Jul 16 2015

refactor: add a header file to configure database
f41535e29c7c
·fabien on Jul 16 2015, 20:44.

Jul 15 2015

refactor: reactmicp::io::OutputNodalVariables
79ea7fb9bd4c
·fabien on Jul 15 2015, 23:41.

Historymasterfe730a86a4bcb821cc54eb5…

Nov 21 2015

Nov 20 2015

Nov 19 2015

Nov 18 2015

Nov 15 2015

Nov 11 2015

Oct 26 2015

Oct 22 2015

Oct 21 2015

Oct 14 2015

Oct 5 2015

Oct 3 2015

Oct 1 2015

Sep 29 2015

Sep 26 2015

Sep 14 2015

Sep 9 2015

Aug 11 2015

Jul 20 2015

Jul 17 2015

Jul 16 2015

Jul 15 2015

History
masterfe730a86a4bcb821cc54eb5…