Diffusion SpecMiCP / ReactMiCP (master) History

specmicp/src
mastere96f9ec8af079a19322b685…

Oct 14 2015

Saturation Equation (unsaturated)
e96f9ec8af07
·fabien on Oct 14 2015, 22:03.
TransportConstraints : constraints for transport equations
9f400fef0c2a
·fabien on Oct 14 2015, 22:03.
Variables for the unsaturated reactive transport system
4e3d1dd452a3
·fabien on Oct 14 2015, 22:03.
associate numbers with StaggerReturnCode for quick debugguing
a7c86055496b
·fabien on Oct 14 2015, 22:03.
add water viscosity as constants
982e05359269
·fabien on Oct 14 2015, 22:03.
add helper function to check failure of parabolic solver
4f607141ce7f
·fabien on Oct 14 2015, 22:03.
fix: header guard for src/utils/compat.hpp
d577c5f2a2cb
·fabien on Oct 14 2015, 22:03.

Oct 5 2015

fix: fix debye-huckel law and tests
284828328b97
·fabien on Oct 5 2015, 04:36.

Oct 3 2015

fast: optimize debye-huckel law
386ce7bfa07c
·fabien on Oct 3 2015, 17:28.

Sep 29 2015

refactor: separe residual water in 2 functions
8eea5f44bc3c
·fabien on Sep 29 2015, 18:08.
fix: re-compute gas scaling factor
bc2979556f46
·fabien on Sep 29 2015, 18:08.
refactor: rename saturation_ -> volume_fraction_ in AdimensionalSystem
fcd797321b23
·fabien on Sep 29 2015, 18:08.
refactor: remove AdimensionalSystem header inclusion in solver
4e562635f94b
·fabien on Sep 29 2015, 16:16.
fix: correct functions for volume fraction gas
4f8c2e8a5fc2
·fabien on Sep 29 2015, 16:16.
feature: add water pressure model in specmicp
4bb92b2d2b3f
·fabien on Sep 29 2015, 16:16.

Sep 26 2015

impr: padding in adimensional_system_solution
e1d44a9d9d81
·fabien on Sep 26 2015, 23:53.

Sep 14 2015

refactor: hide default options of AdimensinalSystemOptions
24ef8eadfa0f
·fabien on Sep 14 2015, 23:30.
refactor: adim default options are now in config_*.h file
f0fd4a5cd0ff
·fabien on Sep 14 2015, 23:04.
refactor: move configuration solution output in config_<> file
8f3676bf7899
·fabien on Sep 14 2015, 22:11.
output: add comment in solution files of SpecMiCP
3fe35fdcbd16
·fabien on Sep 14 2015, 21:55.

Sep 9 2015

fix: print the simplified db in specmicp output
7465729f8739
·fabien on Sep 9 2015, 21:37.
fix: correct initialisation of variables in AdimensionalSolver
390c23c8aaee
·fabien on Sep 9 2015, 21:35.
fix: correct parsing of a fix fugacity constraint
e8d5bb01032b
·fabien on Sep 9 2015, 21:34.

Aug 11 2015

impr: abort solution parsing if metadata are not correct
db7f20a8c8a1
·fabien on Aug 11 2015, 20:55.
cosmetic: remove old code in comment
f75db11b41df
·fabien on Aug 11 2015, 20:54.
cosmetic: remove comments that show up in the TODO list
b9dca64bf78b
·fabien on Aug 11 2015, 20:53.
impr: refactor the clean_label function
51f3d18104e9
·fabien on Aug 11 2015, 20:21.
impr: use pimpl idiom in transprot stagger
87008f18555b
·fabien on Aug 11 2015, 18:16.
impr: flag to use chemistry rate in residual computation
f55d9b72639e
·fabien on Aug 11 2015, 16:49.

Jul 20 2015

fix: logging should now works,
923b00e74e4f
·fabien on Jul 20 2015, 23:01.
fix: correct assertions in adimensional system numbering
1c251fa879ac
·fabien on Jul 20 2015, 23:00.

Jul 17 2015

fix: Correct saturation index sum
5d8f161fb9ba
·fabien on Jul 17 2015, 19:34.
feat: print saturation index in reactmicp output
d8ef5759bebd
·fabien on Jul 17 2015, 16:41.

Jul 16 2015

refactor: add a header file to configure database
f41535e29c7c
·fabien on Jul 16 2015, 20:44.

Jul 15 2015

refactor: reactmicp::io::OutputNodalVariables
79ea7fb9bd4c
·fabien on Jul 15 2015, 23:41.
feat: add assert macro to check bounds of species in database
7689fcf7d1fd
·fabien on Jul 15 2015, 23:40.

Jul 13 2015

fix: modificator.set_minerals_kinetic
cee2d2898673
·fabien on Jul 13 2015, 20:56.
unit api : improve -> pressure converter
5a5d1f0d9096
·branch: specmicp_bin
·fabien on Jul 13 2015, 18:10.
database api : improve
dfe1eaf99c56
·fabien on Jul 13 2015, 18:08.

Jun 29 2015

impr: add a base class for a class containing the database
454602ca96d0
·fabien on Jun 29 2015, 23:10.
impr: add functions to find class and properties of aqueous/solid phases
3ed7f43ef718
·fabien on Jun 29 2015, 23:06.
impr: Add errors for every species if label is invalid
8bbfbc127ea9
·fabien on Jun 29 2015, 22:59.
impr: add numerical information about the scalar_t type
a9ac384357e6
·fabien on Jun 29 2015, 22:54.

Jun 25 2015

Install SpecMiCP library
829fead4677c
·fabien on Jun 25 2015, 23:21.
refact: csv_formatter use the FormatInformation class
113dcc715445
·fabien on Jun 25 2015, 22:53.
fix: fix warning du to signed/unsigned comparison
668f776a2727
·fabien on Jun 25 2015, 22:50.
feat: add database checking option in specmicp binary
321d2e2ffc8c
·fabien on Jun 25 2015, 19:50.
feature: Add specmicp binary
716c76a4f13f
·fabien on Jun 25 2015, 19:24.
Use the new format class info in output.
7d9e3901a22c
·fabien on Jun 25 2015, 19:24.
Configure the YAML emitter using the format class.
f42e076c0b54
·fabien on Jun 25 2015, 19:24.
Add formatter information
6f5079157492
·fabien on Jun 25 2015, 19:24.
fix: remove output when checking equation
e531335c0c1f
·branch: database
·fabien on Jun 25 2015, 19:10.
feat: check formula/equation for compounds, gas and solid phases
d006aa1ac9f9
·fabien on Jun 25 2015, 18:59.

Jun 24 2015

feat: Check composition (break ABI)
036ce82ebfe8
·fabien on Jun 24 2015, 22:44.
Label parser for the element composition
b9da1cfa8545
·fabien on Jun 24 2015, 22:37.

Jun 22 2015

Modify signature of AdimensionalSystemSolver constructors
1212aabdfff4
·fabien on Jun 22 2015, 20:58.
Remove print statement
84f2ee511d2e
·fabien on Jun 22 2015, 20:55.
Add a function to print the constraints
0a4a5f442443
·fabien on Jun 22 2015, 20:30.
Add an option to remove half-cell reaction in configuration
08252559070d
·fabien on Jun 22 2015, 20:27.
Fix bug in SpecMiCP configuration
a01084ae1afa
·fabien on Jun 22 2015, 20:26.

Jun 19 2015

Do not remove H[+]/HO[-] when dissolving system
28fbffc41fa8
·fabien on Jun 19 2015, 23:06.

Jun 12 2015

Fix report of wrong label for the composition in the database
3867cdd1bfe7
·fabien on Jun 12 2015, 20:29.
Add option to remove all half-cells reactions
f3e5ca061b88
·fabien on Jun 12 2015, 20:28.

Jun 10 2015

Correct includes in io files
7fee7928fda3
·fabien on Jun 10 2015, 16:21.
Fix, minor improvements in SpecMiCP module
1d81493e610c
·fabien on Jun 10 2015, 16:20.
Fixes in the database module
54c13dbb2616
·fabien on Jun 10 2015, 16:17.

Jun 9 2015

Documentation
f9d6ee556023
·fabien on Jun 9 2015, 14:44.
Remove jsoncpp from the tree
e398b85a0be5
·fabien on Jun 9 2015, 05:54.
Move AdimensionalSystemSolverSaver to YAML formatting
f28c1c458a8b
·fabien on Jun 9 2015, 05:53.
Update YAML module
e8dc7ec357c5
·fabien on Jun 9 2015, 05:52.
The database writer is now using the yaml api
eb6ac2b2a0e3
·fabien on Jun 9 2015, 00:14.

Jun 8 2015

Add a YAML reader for the database
3bce4fde6bb4
·fabien on Jun 8 2015, 19:45.
Update configurations to use the new updates in YAML module
35f1ce4a8720
·fabien on Jun 8 2015, 19:44.
Update YAML module
2f3742d01773
·fabien on Jun 8 2015, 19:41.

Jun 6 2015

Correct bug in the database writer
f7dce508a58b
·fabien on Jun 6 2015, 20:02.
Add a list of element list in the database
1300961d6545
·fabien on Jun 6 2015, 20:02.
Add make_unique in compat.hpp
565b49a574a1
·fabien on Jun 6 2015, 18:39.

Jun 5 2015

Add more constraints configuration
e809292d7440
·branch: configuration
·fabien on Jun 5 2015, 16:47.
Start implementing constraints configuration in SpecMiCP
88a299bc1607
·fabien on Jun 5 2015, 04:15.
Add Configuration for formulation
7178ca623984
·fabien on Jun 5 2015, 03:38.

Jun 2 2015

Modify molar_mass_<species> in DataContainer
7d1722d5bb0f
·fabien on Jun 2 2015, 16:30.

May 29 2015

Add units finder
a1c21c7ef93f
·fabien on May 29 2015, 21:55.
Add an option to not modify the database in the dissolver
202e336d65a6
·fabien on May 29 2015, 05:01.

May 28 2015

Use the compounds in the dissolver
fd28a36ed4a4
·fabien on May 28 2015, 22:57.
Add database compounds
1c4ac43c0eff
·fabien on May 28 2015, 22:40.
Style in src/utils/CMakeLists.txt
8ca32b3356df
·fabien on May 28 2015, 21:01.

May 26 2015

Improve symbol exports in shared libraries
4f50ed8f52d4
·fabien on May 26 2015, 15:44.

May 25 2015

Start configuration for ReactMiCP
025051f8bb41
·fabien on May 25 2015, 21:55.
correct mesh configuration
d2f6af05b2a9
·fabien on May 25 2015, 21:25.
Use either the number of nodes or dx to build a uniform axisymmetric mesh
1c373d7b9bed
·fabien on May 25 2015, 21:24.
forward declaration of YAML::Node in db conf
36ba3a378a95
·fabien on May 25 2015, 21:23.

May 24 2015

Database configuration
8125b93b7f67
·fabien on May 24 2015, 22:50.
Mesh configuration using YAML language
5c4906ae4e6c
·fabien on May 24 2015, 20:45.
Add helper functions for YAML configurations
add6a4326b0b
·fabien on May 24 2015, 20:40.

May 22 2015

Add UserTermination in DiffusiveUpscalingStagger
a7f264f4cbb4
·fabien on May 22 2015, 15:44.

May 20 2015

Flush output for regular output
4de161c78d57
·fabien on May 20 2015, 19:58.
Correct (?) treatment of fixed components
c082bf825032
·fabien on May 20 2015, 15:03.
Style corrections
009a007fe380
·fabien on May 20 2015, 14:50.

May 18 2015

Remove duplicate line in transport staggerd of saturated system
7499194f1147
·fabien on May 18 2015, 20:13.
Add option to save total concentrations
2a708c0db172
·fabien on May 18 2015, 20:13.

specmicp/srcmastere96f9ec8af079a19322b685…

Oct 14 2015

Oct 5 2015

Oct 3 2015

Sep 29 2015

Sep 26 2015

Sep 14 2015

Sep 9 2015

Aug 11 2015

Jul 20 2015

Jul 17 2015

Jul 16 2015

Jul 15 2015

Jul 13 2015

Jun 29 2015

Jun 25 2015

Jun 24 2015

Jun 22 2015

Jun 19 2015

Jun 12 2015

Jun 10 2015

Jun 9 2015

Jun 8 2015

Jun 6 2015

Jun 5 2015

Jun 2 2015

May 29 2015

May 28 2015

May 26 2015

May 25 2015

May 24 2015

May 22 2015

May 20 2015

May 18 2015

specmicp/src
mastere96f9ec8af079a19322b685…