Diffusion SpecMiCP / ReactMiCP (reactmicp/unsaturated) History

History
reactmicp/unsaturated66d0ee73e788e468dfd1958…

Nov 20 2015

Merge branch 'reactmicp/unsaturated' of bitbucket.org:specmicp/specmicp into…
66d0ee73e788
·fabien on Nov 20 2015, 22:52.
fix : unsaturated reactive transport is working ! but slow...
a6c6bddc3c1f
·fabien on Nov 20 2015, 22:49.
feat: use new SaturationPressureEquation in transport stagger
05403a90982d
·fabien on Nov 20 2015, 15:07.
impr: use the template instanciation from equation units in transport stagger
ecdedfed7695
·fabien on Nov 20 2015, 15:07.
feat: add SaturationPressureEquation
9a2ffe1a0437
·fabien on Nov 20 2015, 15:07.
impr: use ValueChecker to check unsaturated variables
6ce35e10c6f3
·fabien on Nov 20 2015, 15:07.
feat: Check values in a vector
d8e2f5ee10ea
·fabien on Nov 20 2015, 15:07.
impr: introduce FV1DOFEquation
276744263d3d
·fabien on Nov 20 2015, 15:05.
fix: fix aqueous transport test initialization
08b1bb05b612
·fabien on Nov 20 2015, 15:05.
doc/test: utils/moving_average.hpp
06bb2ef6e1eb
·fabien on Nov 20 2015, 04:53.
doc/test: timer
bf8793cc25ec
·fabien on Nov 20 2015, 04:04.

Nov 19 2015

impr: use ValueChecker to check unsaturated variables
e999d01cbe20
·fabien on Nov 19 2015, 19:33.
feat: Check values in a vector
3eb65fe1c313
·fabien on Nov 19 2015, 19:33.

Nov 18 2015

impr: introduce FV1DOFEquation
90339a469f5d
·fabien on Nov 18 2015, 15:45.
fix: fix aqueous transport test initialization
96b5ee0af24c
·fabien on Nov 18 2015, 15:28.

Nov 15 2015

fix: export symbols of hdf5 functions
307c69a60f2b
·fabien on Nov 15 2015, 22:36.
fix: fix close/open
8321e658cc93
·fabien on Nov 15 2015, 21:44.
feat: save transport properties as well
3390f8785beb
·fabien on Nov 15 2015, 21:43.
feat: save unsaturated variables
648ee677491f
·fabien on Nov 15 2015, 21:43.
fix: consistent API, name is before section in save_*() in HDF5 format
7d858caaf955
·fabien on Nov 15 2015, 21:43.
feat: save mesh coordinates in hdf5 format
150b8fef3a58
·fabien on Nov 15 2015, 21:43.
Feat: save database labels in HDF5 file
f79a6c9e55fb
·fabien on Nov 15 2015, 21:43.
Fix : HDF5 : Hide implementation symbols
9f2a62399b3d
·fabien on Nov 15 2015, 21:43.
feat: save adimensional system solution in hdf5
28a4bc161e9f
·fabien on Nov 15 2015, 21:43.
feat: write Eigen matrix in hdf5 file
20f512c2959a
·fabien on Nov 15 2015, 21:43.
feat : HDF5File : wrapper around a HDF5 file
8f9891f52ab4
·fabien on Nov 15 2015, 21:43.

Nov 11 2015

Add atmospheric carbonation example
00f606d8ccd8
·fabien on Nov 11 2015, 21:54.
Add openmp support in equilibrium/transport stagger
e56213af5020
·fabien on Nov 11 2015, 21:54.
API of equilibrium/transport staggers
008df9c9036e
·fabien on Nov 11 2015, 21:54.
Fix/correction/improvement of equilibrium stagger
49e681b556ec
·fabien on Nov 11 2015, 21:54.
variables_interface can initialize node with AdimensionnalExtractor
d536fc3e2489
·fabien on Nov 11 2015, 21:54.
impr: AdimensionalExtractor can now return a copy of the solution
f0a961c3d86d
·fabien on Nov 11 2015, 21:54.
Use relative residuals (per equation) in transport stagger
883b66536f20
·fabien on Nov 11 2015, 21:54.
Allow the user to give a scaling factor for the residuals of each equations
c4d70155deca
·fabien on Nov 11 2015, 21:54.
feat: support for a gas diffusivity per species
55a26ac091b1
·fabien on Nov 11 2015, 21:54.
user header files
f046a3fd7c05
·fabien on Nov 11 2015, 20:23.

Oct 26 2015

add EquilibriumStagger to unsaturated system
328860e72934
·fabien on Oct 26 2015, 23:06.
add EquilibriumConstraints to the unsaturated systems
19b14f34e6cc
·fabien on Oct 26 2015, 23:04.
test: fix transport stagger test for gas species management
9635e63245f6
·fabien on Oct 26 2015, 23:03.
impr: variables: doc, gas, chemistry
c61df97b5350
·fabien on Oct 26 2015, 23:02.
doc : some documentations for transport equations and stagger
ed266db573ec
·fabien on Oct 26 2015, 22:55.

Oct 22 2015

impr: add VariablesInterface in unsaturated system
c9febc252301
·fabien on Oct 22 2015, 22:40.

Oct 21 2015

fix: transport stagger and equations for drying stagger
574c04e43124
·fabien on Oct 21 2015, 22:11.
fix : fix transport constraints
137ca1c0b377
·fabien on Oct 21 2015, 22:10.
fix: fix variables for the drying example
b725b3cc80ed
·fabien on Oct 21 2015, 22:09.
example : add drying example for unsaturated system
0b6746b9ec8d
·fabien on Oct 21 2015, 22:05.
feat: add function to obtain scaling factor from a SI unit
0a01808c94b9
·fabien on Oct 21 2015, 22:03.

Oct 14 2015

Transport stagger for unsaturated system
1d28f469e61d
·fabien on Oct 14 2015, 22:03.
Aqueous liquid transport equation (unsaturated)
9de2802aad38
·fabien on Oct 14 2015, 22:03.
Gas diffusion equation (unsaturated)
0faef04ff3bc
·fabien on Oct 14 2015, 22:03.
Saturation Equation (unsaturated)
e96f9ec8af07
·fabien on Oct 14 2015, 22:03.
TransportConstraints : constraints for transport equations
9f400fef0c2a
·fabien on Oct 14 2015, 22:03.
Variables for the unsaturated reactive transport system
4e3d1dd452a3
·fabien on Oct 14 2015, 22:03.
associate numbers with StaggerReturnCode for quick debugguing
a7c86055496b
·fabien on Oct 14 2015, 22:03.
add water viscosity as constants
982e05359269
·fabien on Oct 14 2015, 22:03.
add helper function to check failure of parabolic solver
4f607141ce7f
·fabien on Oct 14 2015, 22:03.
fix: header guard for src/utils/compat.hpp
d577c5f2a2cb
·fabien on Oct 14 2015, 22:03.

Oct 5 2015

test: add tests for physics/laws.hpp
4119d04a2010
·fabien on Oct 5 2015, 19:18.
fix: fix debye-huckel law and tests
284828328b97
·fabien on Oct 5 2015, 04:36.
toolchain: add basic docker image file
f50a198281ba
·fabien on Oct 5 2015, 01:42.

Oct 3 2015

fast: optimize debye-huckel law
386ce7bfa07c
·fabien on Oct 3 2015, 17:28.
add new micro-benchmark for AdimensionalSystem
3c9f0260c8cc
·fabien on Oct 3 2015, 05:14.
fix: fix FindBenchmark.cmake
cfc694b29259
·fabien on Oct 3 2015, 05:14.

Oct 1 2015

Merge branch 'benchmark'
534fab73249d
·fabien on Oct 1 2015, 04:55.
toolchain: micro-benchmark for database container
e7c0f3e0f2c8
·fabien on Oct 1 2015, 04:50.
toolchain: add support for micro-benchmarking
82b1f62aeb2a
·fabien on Oct 1 2015, 04:50.

Sep 29 2015

Merge branch 'specmicp/adim_refactor'
f71e6ee12d35
·fabien on Sep 29 2015, 18:08.
refactor: separe residual water in 2 functions
8eea5f44bc3c
·fabien on Sep 29 2015, 18:08.
fix: re-compute gas scaling factor
bc2979556f46
·fabien on Sep 29 2015, 18:08.
refactor: rename saturation_ -> volume_fraction_ in AdimensionalSystem
fcd797321b23
·fabien on Sep 29 2015, 18:08.
Merge branch 'specmicp/cappressure'
7da7c3430d33
·fabien on Sep 29 2015, 16:20.
refactor: remove AdimensionalSystem header inclusion in solver
4e562635f94b
·fabien on Sep 29 2015, 16:16.
fix: correct functions for volume fraction gas
4f8c2e8a5fc2
·fabien on Sep 29 2015, 16:16.
feature: add water pressure model in specmicp
4bb92b2d2b3f
·fabien on Sep 29 2015, 16:16.

Sep 26 2015

impr: padding in adimensional_system_solution
e1d44a9d9d81
·fabien on Sep 26 2015, 23:53.

Sep 14 2015

refactor: hide default options of AdimensinalSystemOptions
24ef8eadfa0f
·fabien on Sep 14 2015, 23:30.
refactor: adim default options are now in config_*.h file
f0fd4a5cd0ff
·fabien on Sep 14 2015, 23:04.
refactor: move configuration solution output in config_<> file
8f3676bf7899
·fabien on Sep 14 2015, 22:11.
output: add comment in solution files of SpecMiCP
3fe35fdcbd16
·fabien on Sep 14 2015, 21:55.
test: add test for specmicp library
0d462a7bb38b
·fabien on Sep 14 2015, 15:32.
test: move cmake rules for specmicp test
386114bd5e55
·fabien on Sep 14 2015, 15:13.

Sep 9 2015

fix: print the simplified db in specmicp output
7465729f8739
·fabien on Sep 9 2015, 21:37.
fix: correct initialisation of variables in AdimensionalSolver
390c23c8aaee
·fabien on Sep 9 2015, 21:35.
fix: correct parsing of a fix fugacity constraint
e8d5bb01032b
·fabien on Sep 9 2015, 21:34.
database: add more compounds in cemdata
a0d21846cfdb
·fabien on Sep 9 2015, 21:33.

Aug 11 2015

impr: abort solution parsing if metadata are not correct
db7f20a8c8a1
·fabien on Aug 11 2015, 20:55.
cosmetic: remove old code in comment
f75db11b41df
·fabien on Aug 11 2015, 20:54.
cosmetic: remove comments that show up in the TODO list
b9dca64bf78b
·fabien on Aug 11 2015, 20:53.
impr: refactor the clean_label function
51f3d18104e9
·fabien on Aug 11 2015, 20:21.
impr: use pimpl idiom in transprot stagger
87008f18555b
·fabien on Aug 11 2015, 18:16.
test-fix: micpsolver tests must links to the common lib
33abd27298dd
·fabien on Aug 11 2015, 16:59.
impr: flag to use chemistry rate in residual computation
f55d9b72639e
·fabien on Aug 11 2015, 16:49.

Jul 20 2015

fix: logging should now works,
923b00e74e4f
·fabien on Jul 20 2015, 23:01.
fix: correct assertions in adimensional system numbering
1c251fa879ac
·fabien on Jul 20 2015, 23:00.

Jul 17 2015

fix: Correct saturation index sum
5d8f161fb9ba
·fabien on Jul 17 2015, 19:34.
feat: print saturation index in reactmicp output
d8ef5759bebd
·fabien on Jul 17 2015, 16:41.

Jul 16 2015

refactor: add a header file to configure database
f41535e29c7c
·fabien on Jul 16 2015, 20:44.

Jul 15 2015

refactor: reactmicp::io::OutputNodalVariables
79ea7fb9bd4c
·fabien on Jul 15 2015, 23:41.
feat: add assert macro to check bounds of species in database
7689fcf7d1fd
·fabien on Jul 15 2015, 23:40.

Jul 13 2015

fix: modificator.set_minerals_kinetic
cee2d2898673
·fabien on Jul 13 2015, 20:56.

Historyreactmicp/unsaturated66d0ee73e788e468dfd1958…

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History
reactmicp/unsaturated66d0ee73e788e468dfd1958…