Diffusion tamaas (master) History

History
masterefd5776aa2c04e129ce5aa7…

Jul 10 2020

Merge branch 'master' into feature/mpi_fft_engine
0defcff64961
·frerot on Jul 10 2020, 23:59.
redirecting iostreams to python streams for solve functions
6124726e1b08
·frerot on Jul 10 2020, 23:27.
[JOSS] added citation to Pybind11
9046874a9be5
·frerot on Jul 10 2020, 21:19.
removing unecessary calls to initialize/finalize in examples
7d3736dfcf1f
·frerot on Jul 10 2020, 18:06.
using std::shared_ptr<Functional> as holder type for functionals
aba0a246fdf6
·frerot on Jul 10 2020, 18:04.
correcting typos in rough surface doc
aec3fa0599a4
·frerot on Jul 10 2020, 17:40.
using Partitioner in FFTWMPIEngine
35c4836d6e63
·frerot on Jul 10 2020, 00:27.
added polymorphism to FFTEngines
0752a2fdb670
·frerot on Jul 10 2020, 00:06.

Jul 9 2020

have the same seed for surface gentor across mpi processes
6c2964a9d4d1
·frerot on Jul 9 2020, 20:35.
adding tests for partitioner
9775a947c07f
·frerot on Jul 9 2020, 20:34.
removing unecessary calls to initialize/finalize in examples
6a4012ba1c48
·frerot on Jul 9 2020, 19:40.
ignoring DeprecationWarning with pytest.ini config file
1dcf00b3cf42
·frerot on Jul 9 2020, 19:40.
removed stray tm.finalize's in tests
212e9544374c
·frerot on Jul 9 2020, 17:49.
split fftw mpi interface
ebfd54d08a16
·frerot on Jul 9 2020, 16:58.
passing communicator to mpi interface instead of assuming WORLD
4ced5dac6591
·frerot on Jul 9 2020, 16:30.

Jul 6 2020

tentative implementation of surface generation with mpi
5b293e6eba23
·frerot on Jul 6 2020, 04:17.

Jul 4 2020

added mpi reductions to loops
3f746e302ec4
·frerot on Jul 4 2020, 15:44.

Jul 3 2020

setting proper rpath for tests
f16ec5b85e49
·frerot on Jul 3 2020, 04:53.
added fftw libpath to rpath
c970723f194b
·frerot on Jul 3 2020, 01:45.
added lib64 directory to search for fftw
afb7a2500c3b
·frerot on Jul 3 2020, 01:38.
propertly setting rpaths with $ORIGIN
a4420cd7baa8
·frerot on Jul 3 2020, 01:34.

Jul 2 2020

forcing update with pip on scons install call
14b215073440
·frerot on Jul 2 2020, 21:19.
logging info on root proc
dfa9798ca373
·frerot on Jul 2 2020, 17:34.
added FFTMPIEngine
8facf8e0cda6
·frerot on Jul 2 2020, 16:59.

Jul 1 2020

added rank and reduce to mpi interface
8327d3f42110
·frerot on Jul 1 2020, 15:24.
no need for type traits to print enum labels
962ac4122e60
·frerot on Jul 1 2020, 15:14.
added reserve method to array and grid base
ddca5e722d54
·frerot on Jul 1 2020, 05:23.
allowing subclasses of FFTEngine
cb641f5bb816
·frerot on Jul 1 2020, 05:20.
safeguarding initialization functions
ddd01b4279a8
·frerot on Jul 1 2020, 05:20.

Jun 30 2020

[DOC] fix in example code
8fe083d0bc1b
·frerot on Jun 30 2020, 01:01.

Jun 28 2020

proper initializing of mpi and fftw with threads
1a1af8988bd3
·frerot on Jun 28 2020, 17:32.
added compilation options for MPI
4a8ef3167382
·frerot on Jun 28 2020, 15:10.
making fftengine internals more accessible for subclassing
37620cc9f8b9
·frerot on Jun 28 2020, 15:09.
ensuring initialize and finalized get called
04fa2ac30483
·frerot on Jun 28 2020, 03:09.

Jun 25 2020

getting rid of BOOST_PP_STRINGIZE
f1073dba0c14
·frerot on Jun 25 2020, 17:43.
added access to yield stress and hardening modulus in residual
7dbb2d1099f2
·frerot on Jun 25 2020, 16:42.
fixing CPPDEFINES
2581cf15be7f
·frerot on Jun 25 2020, 16:18.
removed FFTPlanManager and consorts
a66ead09e464
·frerot on Jun 25 2020, 03:06.
making sure CPPDEFINES is a list
4101c62ad2f1
·frerot on Jun 25 2020, 03:06.
making sure libTamaas from build is loaded when running tests
531937f6e06f
·frerot on Jun 25 2020, 02:43.
simplified alloc of in/out pointers in FFTEngine
aa1de33be858
·frerot on Jun 25 2020, 02:38.
making FFTEngine work with fftw flags >= FFTW_MEASURE
5b7d5e177fcd
·frerot on Jun 25 2020, 02:24.
removed remaining calls to FFTPlanManager
8f3b1410b161
·frerot on Jun 25 2020, 00:54.

Jun 24 2020

Merge branch 'master' into feature/fft_engine
3796abfaa1cd
·frerot on Jun 24 2020, 22:18.
added header report for pytest
22578f2b019d
·frerot on Jun 24 2020, 22:13.
reducing system size of test_epic
9919a84cfd1d
·frerot on Jun 24 2020, 19:18.
added short workflow description to contribution section
acb92043a41d
·D250
·frerot on Jun 24 2020, 18:00.
separated workflows for code reviews
4576418a9f6b
·D250
·frerot on Jun 24 2020, 17:52.
add reference to Archard_1957
53478e29a75b
·D249
·frerot on Jun 24 2020, 17:40.
Merge branch 'master' into arcpatch-D249
8c97f9be5457
·frerot on Jun 24 2020, 17:40.
add reference to Archard_1957
250c5d393fe5
·D249
·agshvarts / frerot on Jun 24 2020, 17:38.
added short workflow description to contribution section
9eff7d779bbd
·D250
·frerot on Jun 24 2020, 17:15.
added saturated pressure reference
4663aff62cc0
·frerot on Jun 24 2020, 16:54.
fixed heavy english syntax
c4c90c937206
·frerot on Jun 24 2020, 16:40.
added reference to condat + comment on how unique the code is
6257690b3ebb
·frerot on Jun 24 2020, 16:38.
added a "seeking help" section in doc
274414d905f3
·frerot on Jun 24 2020, 16:02.
cleaning doc before building it
326474e642c8
·frerot on Jun 24 2020, 15:57.
making sure sphinx can import the tamaas module for autodoc
9731ad93e058
·frerot on Jun 24 2020, 15:45.
removed legacy surface generator in test_autocorrelation
d5baa0511b25
·frerot on Jun 24 2020, 05:34.
compiling c++ tests needing pybind11 separately
7af541847c01
·frerot on Jun 24 2020, 05:30.
cleaning up the use of preprocessor macros
3cc1d8a160a7
·frerot on Jun 24 2020, 05:07.
removed unecessary LONG_PRECISION macro guard for fftw interface
548c812ae786
·frerot on Jun 24 2020, 04:28.
moved implementation of legacy surface statistics to separate cpp
75a2de973a73
·frerot on Jun 24 2020, 04:16.
using holder type for fftw plans in FFTEngine
d66116666bb9
·frerot on Jun 24 2020, 01:18.
fixing long double fftw interface
b4bacea3061c
·frerot on Jun 24 2020, 01:16.
converted statistics to FFTEngine
6bd8cd25056a
·frerot on Jun 24 2020, 00:18.

Jun 23 2020

converted surface generators to FFTEngine
a6e0bde62253
·frerot on Jun 23 2020, 23:52.
using FFTEngine in Westergaard integral operator
4e2d7b75fd90
·frerot on Jun 23 2020, 21:14.
adding computeFrequencies to FFTEngine
be7bc1258547
·frerot on Jun 23 2020, 21:13.

Jun 22 2020

added FFTEngine class
f8e1e9c7a919
·frerot on Jun 22 2020, 20:54.
ignoring deprecation warnings in test_dumper
7d5bdcdc47bb
·frerot on Jun 22 2020, 20:53.

Jun 18 2020

added __contains__ and __iter__ to model bindings
2c3c3ddadf5a
·frerot on Jun 18 2020, 16:23.

Jun 12 2020

updated pipe_tools
ec31430164d5
·frerot on Jun 12 2020, 16:29.
added const for some variables
8af0575bda15
·frerot on Jun 12 2020, 01:07.
fixing recursion issue with ToleranceManager
ff710f40e7e3
·frerot on Jun 12 2020, 01:06.

Jun 11 2020

added compression to UVW dumper
e8c4a114f2ec
·frerot on Jun 11 2020, 20:06.

Jun 9 2020

compressing diff to reduce binary size
6258c7cd43d7
·frerot on Jun 9 2020, 21:11.
added a group dumper for paraview data
ace594b68267
·frerot on Jun 9 2020, 21:04.

Jun 8 2020

writing solver infos to stderr
58fde8ae6754
·frerot on Jun 8 2020, 23:42.
simplified helpers in dumpers
022385d24743
·frerot on Jun 8 2020, 23:42.

Jun 2 2020

simplify git diff stored in binary
64ad818b2ad5
·frerot on Jun 2 2020, 20:39.

May 29 2020

added doc dependencies to Dockerfile
642e354870ce
·frerot on May 29 2020, 17:48.
added intended audience statement in paper and doc index
6fbf01812e11
·frerot on May 29 2020, 17:08.

May 26 2020

testing dumped array values instead of shape
c265f81a2c96
·frerot on May 26 2020, 22:19.
compatibility with python3 scons
bd3962ca451f
·frerot on May 26 2020, 21:57.

May 19 2020

proper definition of python package extras
6292bc12d9e3
·frerot on May 19 2020, 17:37.
better normalization in patch plasticity test
a5c45c2f1235
·frerot on May 19 2020, 17:37.

May 8 2020

[doc] update copyright in sphinx doc
c0bceb17cc1d
·frerot on May 8 2020, 18:12.

May 6 2020

added a test of the EPIC solver [see 09e51e6]
2c694d3bf38f
·frerot on May 6 2020, 00:08.

May 5 2020

added scons target to generate source archive
a1344da0cd86
·frerot on May 5 2020, 22:35.
removing unused files
143a681c1611
·frerot on May 5 2020, 18:40.
update expolit version
83546ffe8bd1
·frerot on May 5 2020, 18:25.
updating copyright years
ae0010d56921
·frerot on May 5 2020, 18:13.
always compiling tamaas_info, even when strip_info==True
4884455e012f
·frerot on May 5 2020, 17:30.

Apr 29 2020

better generation of information file
c1bb3fddf59a
·frerot on Apr 29 2020, 16:34.

Apr 28 2020

fixed memory error in transformOutput
c0aa1c51f0e8
·frerot on Apr 28 2020, 21:27.
fixing convergence issue with non-linear solvers
09e51e6a41e7
·frerot on Apr 28 2020, 18:40.

Apr 27 2020

removed print statement
8368c5ece053
·frerot on Apr 27 2020, 20:27.
cleaned up code for pybind11 detection and module building
0f8bb69278d8
·frerot on Apr 27 2020, 18:00.

Apr 23 2020

added a check for numpy in pybind11 tool
3320663b66ec
·frerot on Apr 23 2020, 20:45.

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History
masterefd5776aa2c04e129ce5aa7…