Diffusion ShoulderDB_ImportSegmentMeasureAnalyze (aterrier-plotUpdate) History

History
aterrier-plotUpdate663d750ac4afd697a2a1f1a…

Dec 31 2018

Modified to work with config file
663d750ac4af
·aterrier on Dec 31 2018, 22:53.

Dec 30 2018

Add filename argument, corrected SCase sheet name, corrected SCase_ID colomn…
50a784fc7539
·aterrier on Dec 30 2018, 23:59.
Minor changes in the definition of dir variables
86fd82a71ff5
·aterrier on Dec 30 2018, 23:48.
Works with config file and log file
c7b6497c3968
·aterrier on Dec 30 2018, 22:53.
Works with updated listSCase (config file), and corrected error (SCase_id -->…
e4b4c59468ad
·aterrier on Dec 30 2018, 22:46.
Error if config file not present
a074f84485f4
·aterrier on Dec 30 2018, 22:40.
Minor changes in listSCase
93a7e498033d
·aterrier on Dec 30 2018, 22:14.
Remove commented code (to treat single CT-xxx-1 dir) in listSCase
82d2356429d8
·aterrier on Dec 30 2018, 21:55.
listSCase modified to read config file, save log in log dir within current dir.
e900d8e2a796
·aterrier on Dec 30 2018, 21:42.
Add dataDev in config file (probably not done in previous commit)
fd48113123b2
·aterrier on Dec 30 2018, 21:40.
Add dataDev in config file
81359327071c
·aterrier on Dec 30 2018, 21:36.

Dec 24 2018

Various file removed from staging
209e00661fe2
·aterrier on Dec 24 2018, 22:58.
statSCase.m updated by AT
1e755e164d3f
·aterrier on Dec 24 2018, 22:40.
Comment added by JSM
7434b144f712
·aterrier on Dec 24 2018, 22:38.
Updated comment in csv2xlsSCase.m
264615637313
·aterrier on Dec 24 2018, 22:35.
Update listSCase.m
ff76150cfd4b
·aterrier on Dec 24 2018, 22:31.
Small error corrected in README.md
3104f5dd4077
·aterrier on Dec 24 2018, 22:21.
Add emplty calcDensity in Glenoid.m
98c701372cbd
·aterrier on Dec 24 2018, 22:13.
Remove the constrain of CT-xxx-1 in ShoulderCase.m
23594594ab11
·aterrier on Dec 24 2018, 22:10.

Nov 18 2018

Add dicominfoSCase.m, which replaces CTinfoCT.m
e71bb57755cf
·aterrier on Nov 18 2018, 21:51.
Add plotSCase.m function, which display the scapula of a SCase with some…
b10ddef059ec
·aterrier on Nov 18 2018, 21:26.
Add the class ShoulderCase
91ab4a5701bb
·aterrier on Nov 18 2018, 21:13.

Aug 16 2018

Remove xls after writing csv to avoid outdated xls
99c9cb1f408b
·aterrier on Aug 16 2018, 13:07.
README.md replaced readme.md
54ddcc3bd331
·aterrier on Aug 16 2018, 12:50.
readme.md added to local repository
c003a89f3c06
·aterrier on Aug 16 2018, 12:16.
statSCase added to local repository
91f2bd15e819
·aterrier on Aug 16 2018, 12:15.
csv2xlsSCase added to local repository
2930fef27b30
·aterrier on Aug 16 2018, 12:14.
plotSCase added to local repository
753ecd6815f5
·aterrier on Aug 16 2018, 12:13.
measureSCase added to local repository
aef115c10f44
·aterrier on Aug 16 2018, 12:12.
Add listSCase in local repository
9f74455c6ab2
·aterrier on Aug 16 2018, 12:08.
dicominfoSCase added in local repository
d36a8bc25627
·aterrier on Aug 16 2018, 12:01.

Jan 26 2018

readme added in CT directory and comments added in CT/infoCT.m
4b5355e68791
·aterrier on Jan 26 2018, 21:59.

Dec 27 2017

feat: Add caseID in muscle struct
a24d4e758f9c
·kcosende on Dec 27 2017, 14:02.
fix: Change the path to the CT database
33b970a1adec
·kcosende on Dec 27 2017, 14:02.
fix: Correct the path to the database location
e904cadc2345
·kcosende on Dec 27 2017, 14:02.
No change
e47f0486b7e4
·kcosende on Dec 27 2017, 14:02.
Add automatically all folder and subfolder when this script is run.
05553cd3e2fc
·kcosende on Dec 27 2017, 14:02.
If the scapula is segmented, take the AL (Acromion Lateral) on the scapula and…
5f2606627edf
·kcosende on Dec 27 2017, 14:02.

Oct 6 2017

fix: Add a condition about institution name
c59b4f191b3d
·kcosende on Oct 6 2017, 16:13.

Oct 2 2017

Test
d2688ea8a5e5
·kcosende on Oct 2 2017, 13:07.

Sep 29 2017

fix: Change the dimension of matrix DistanceToCyl0
e2a7530d8988
·kcosende on Sep 29 2017, 10:20.

Sep 27 2017

refactor: Remove unused code and fix warnings in scapula_calculation.m
afeb5b82c938
·vmalfroy on Sep 27 2017, 17:43.

Sep 26 2017

fix: Change the format date for birthday patient and CT date
e6c18fd1e866
·kcosende on Sep 26 2017, 11:37.
fix: Update the location for xlswrite (XLSShoulderDatabaseLocation)
1ba0b9dff245
·kcosende on Sep 26 2017, 10:07.

Sep 25 2017

feat: Add new case to MySQL database when running infoCT.m
91b521f14899
·vmalfroy on Sep 25 2017, 11:16.
feat: infoCT.m writes directly to CT.xls in xlsFromMatlab instead of current…
e412f5003517
·vmalfroy on Sep 25 2017, 11:11.
fix: Update path to Generated_Amira_TCL_Scripts for References in…
5bde85dd1e78
·vmalfroy on Sep 25 2017, 11:02.

Sep 19 2017

Remove DB_Drivers files
6931ec9eca89
·vmalfroy on Sep 19 2017, 13:04.
fix: Export humerus sphere tcl script to the correct folder
bd6241a930a6
·kcosende on Sep 19 2017, 11:46.

Sep 15 2017

refactor: Remove Amira generated scripts and database drivers from version…
f619ec087b5e
·vmalfroy on Sep 15 2017, 18:41.
refactor: Refactor Shoulder CT Measurements code - Hierarchy and Folders…
3761869a7f6d
·vmalfroy on Sep 15 2017, 18:33.
fix: Fix format of birth date in table 'anonymity'.
bbcdba2602f0
·vmalfroy on Sep 15 2017, 17:36.
fix: Fiy typo in glenoid.version_ampl column name
fdbeb459bbc4
·vmalfroy on Sep 15 2017, 17:34.
fix: Adapt to changes in column names made in both the XLS and mySQL databases
a30b07b1a173
·vmalfroy on Sep 15 2017, 16:48.
fix: Solved bugs when print {Line-Set3}
89d10748f354
·kcosende on Sep 15 2017, 15:58.
fix: Change location of XLS shoulder database to lbovenus
2279cfd782f9
·vmalfroy on Sep 15 2017, 12:48.
Merge branch 'muscles_branch'
8c4c3a6fc16b
·vmalfroy on Sep 15 2017, 12:39.
Add shoulder muscles measurements files
81d816e93d47
·vmalfroy on Sep 15 2017, 12:39.
fix: Fix names of LineSet modules and Cylinder surface in the generation of the…
b880bc349c8d
·vmalfroy on Sep 15 2017, 10:34.
feat: Add handling of scapula.AI to Excel2MySQL databases scripts
0f6c3a5bee84
·vmalfroy on Sep 15 2017, 10:30.

Sep 1 2017

fix: Compute normal before pathological cases
233813c10a01
·vmalfroy on Sep 1 2017, 14:04.
fix: Fix computation of Acromion Index (AI)
e29f7f99f0cc
·vmalfroy on Sep 1 2017, 13:55.

Aug 22 2017

feat: Add computation of Acromion Index (AI)
d61a245e1f9e
·vmalfroy on Aug 22 2017, 17:51.

Aug 8 2017

refactor: move scapula_calculation files to separate folder
841f68b0f3a1
·vmalfroy on Aug 8 2017, 18:53.
Merged master anatomical measurements conflicts
d19d4d820af0
·vmalfroy on Aug 8 2017, 18:46.
fix: Solved bugs when handling multiple Case IDs
bcebeb549ec0
·vmalfroy on Aug 8 2017, 15:58.

Aug 7 2017

fix: Add missing functions to get CT properties
853593394513
·vmalfroy on Aug 7 2017, 14:03.
feat: Add code for glenoid bone density measurements
b2849724256a
·vmalfroy on Aug 7 2017, 14:02.
feat: Add code fot Humerus anatomical measurements
b82336bbf732
·vmalfroy on Aug 7 2017, 14:01.
fix: Add missing function for scapula anatomy measurements
7b20474cf7b1
·vmalfroy on Aug 7 2017, 13:59.
feat: Initial code to get CT properties
56d95df3d151
·vmalfroy on Aug 7 2017, 13:48.
feat: Initial code scapula anatomical measurements
67cf25288424
·vmalfroy on Aug 7 2017, 13:11.

Jul 4 2017

feat: Add functions handling 3D muscle measurement
ba1e1bc5a28e
·vmalfroy on Jul 4 2017, 17:50.
docs: Update muscleDegeneration function help
452b27fa246b
·vmalfroy on Jul 4 2017, 17:48.

Jun 29 2017

feat: Output structure array for multiple case IDS
f744fa0d66ea
·vmalfroy on Jun 29 2017, 16:13.
feat: Plot fat & osteochondroma segmented area
54f13cba374d
·vmalfroy on Jun 29 2017, 15:56.
feat: Add area of muscle measurements to output
260f40b8f635
·vmalfroy on Jun 29 2017, 15:38.

Jun 27 2017

docs: Edit help to reflect recent changes
f49a0881f114
·vmalfroy on Jun 27 2017, 11:57.

Jun 26 2017

fix: Fix osteochondroma threshold
8747b83331be
·vmalfroy on Jun 26 2017, 10:29.
feat: Adjust atrophied muscle threshold
a74f025ac3bd
·vmalfroy on Jun 26 2017, 10:25.
feat: Keep only biggest component of muscle
e39408be75dd
·vmalfroy on Jun 26 2017, 10:22.
feat: Add new thresholds for muscle and fat
c031afeafd61
·vmalfroy on Jun 26 2017, 10:16.

Jun 21 2017

feat: Add script to rebuild all 'muscle' database
06bc77344906
·vmalfroy on Jun 21 2017, 09:56.
feat: New thresholds, fat segmentation, and plots
80f90d958b95
·vmalfroy on Jun 21 2017, 09:54.

Jun 19 2017

feat: Change output figure folder, name and title
5cc4f827a990
·vmalfroy on Jun 19 2017, 17:21.
fix: Fix error when loading multiple Case IDs
b7789f298b16
·vmalfroy on Jun 19 2017, 17:20.
fix: Remove reading of XLS shoulder database
c77214b86648
·vmalfroy on Jun 19 2017, 14:36.
feat: Remove saving results to database
30aa777b9d8b
·vmalfroy on Jun 19 2017, 11:44.

Jun 15 2017

fix: Fix variable normalization of images
fb9e5f2dfccc
·vmalfroy on Jun 15 2017, 09:58.

Jun 14 2017

fix: Fix error when using multiple CaseIDs
da3e00881c47
·vmalfroy on Jun 14 2017, 10:41.

Jun 13 2017

style: Move declaration of databases location
8886c71eeb9f
·vmalfroy on Jun 13 2017, 18:49.
refactor: Remove files to focus rep on anatomy
7154ebb85bab
·vmalfroy on Jun 13 2017, 18:47.
docs: Fix mispelling in degenerationAll help
b9dff007fe38
·vmalfroy on Jun 13 2017, 18:38.
feat: Fill muscle table in MySQL shoulder database
94fbd1403e76
·vmalfroy on Jun 13 2017, 18:34.
style: Move HU thresholds to beginning of file
21365dc0c4c6
·vmalfroy on Jun 13 2017, 17:38.
refactor: Write directly to XLS ShoulderDatabase
051c311a2227
·vmalfroy on Jun 13 2017, 17:31.

Jun 12 2017

chore: Remove unnecessary MATLAB command clean
10cef55cef01
·vmalfroy on Jun 12 2017, 11:33.
docs: Add help on degenerationAll function
a77bc2c7e3c8
·vmalfroy on Jun 12 2017, 11:30.
style: Format and clean code
405ab4f330eb
·vmalfroy on Jun 12 2017, 10:15.
refactor: Change format of input for subject
5a4fc51445cf
·vmalfroy on Jun 12 2017, 10:06.

Historyaterrier-plotUpdate663d750ac4afd697a2a1f1a…

Dec 31 2018

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Jun 12 2017

History
aterrier-plotUpdate663d750ac4afd697a2a1f1a…