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Diffusion BIOP Run Macro (master) Graph

ijp-biop-run-macro/algorithms
master

History Graph

CommitAuthorDetailsCommitted
642c55aa2288Johannes Schindelin
Mavenize Colocalisation_Analysis 
Jul 4 2012
fb9a9741805aTom Kazimiers
Coloc 2: fix slightly wrong bin width calculation of histograms 
Jun 26 2012
804037739951Tom Kazimiers
Coloc 2: do correct up/down rounding in histogram 
Jun 26 2012
32f523e08cb6Tom Kazimiers
Coloc 2: don't scale histogram intensities up if maximum < bins 
Jun 26 2012
c012a17a59dbTom Kazimiers
Coloc 2: reuse single array pixel look-ups during histogram creation 
Jun 26 2012
dd2a88ada7deTom Kazimiers
Coloc 2: get rid of some complier warnings 
Jun 20 2012
f3ddcbb35211Tom Kazimiers
Coloc 2: fix Imglib2 related compilation issues 
Jun 20 2012
5e3a7c9d04afTom Kazimiers
Coloc 2: fix Spearman T statistics calculation 
Jun 20 2012
8cc14ced4cc7Tom Kazimiers
Coloc 2: add alternative Spearman Rank call 
Jun 20 2012
4f3cb825fe18Leonardo Guizzetti/Tom Kazimiers
Coloc 2: add override annotation and small style change 
Jun 20 2012
8878ad5cec85Tom Kazimiers
Coloc 2: use RandomAccessibleInterval instead of Img 
Jun 20 2012
bb87f31f40b3Tom Kazimiers
Coloc 2: migrate to Imglib2 
Jun 20 2012
747cf201317eLeonardo Guizzetti/Tom Kazimiers
Coloc 2: Added Spearman Rank Correlation. 
Jun 20 2012
2952b8238117Tom Kazimiers
Coloc 2: fix typo 
Jun 20 2012
d8e5cb48953aTom Kazimiers
Coloc 2: make the threshold regression use a better bisection method 
Nov 4 2011
0bdc57a3b16bTom Kazimiers
Coloc 2: fix problem with masks having a z-offset that crashed Costes 
Nov 4 2011
e6cd516c459cTom Kazimiers
Coloc 2: add background subtraction suggestion to warning in auto-threshold 
Nov 4 2011
e402fb9627f9Tom Kazimiers
Coloc 2: add warnings for auto-threshold if new thr. is above image mean 
Nov 4 2011
0a54ae6a95f0Tom Kazimiers
Coloc 2: correctly close the cursor after usage 
Oct 17 2011
ea1001d3d856Tom Kazimiers
Coloc 2: rename ManderCorrelation to MandersColocaization 
Oct 14 2011
5de35927c443Tom Kazimiers
Coloc 2: factor out actual Manders calculation into separate class 
Oct 10 2011
61d164223efbTom Kazimiers
Coloc 2: fix bug in Li's ICQ calculation 
Oct 10 2011
d899ff44b1feTom Kazimiers
Coloc 2: fix bug in Costes algorithm that ignored the mask offset 
Oct 8 2011
0e03b8c5e9a3Tom Kazimiers
Coloc 2: reword an error message 
Oct 8 2011
b94896015df0Tom Kazimiers
Coloc 2: Reduce dependence between two channels in thresholded Manders 
Oct 7 2011
7f4665db2edaTom Kazimiers
Coloc 2: Add status information to ImageJ GUI 
Oct 7 2011
5e085aa58c11Tom Kazimiers
Coloc 2: make Costes calculations fit into new architecture 
Oct 7 2011
f2ef0b85f9c4Tom Kazimiers
Coloc 2: add option to GUI to show shuffled image from Costes calculations 
Oct 7 2011
b9ab8436f5d2Tom Kazimiers
Coloc 2: Allow external invocation of Persons calculation with a mask 
Oct 7 2011
8ff136663665Tom Kazimiers
Coloc 2: Indicate what kind of mask is used in a cleaner way 
Oct 7 2011
15bcc7fd03cdTom Kazimiers
Coloc 2: Style fixes and a member name change for readability 
Oct 7 2011
1322f8d9eb4bTom Kazimiers
Coloc 2: let input check algorithm use twin curor and mask 
Oct 7 2011
fda14d986b67Tom Kazimiers
Coloc 2: Use TwinCursor in 2D histogram (scatter plot) and Lis histograms 
Oct 7 2011
bc47cac09e7aTom Kazimiers
Coloc 2: style and spelling fixes 
Oct 7 2011
dfd2db0116b8Tom Kazimiers
Coloc 2: Fix a not-yet-ported part of auto threshold regression 
Oct 7 2011
7281f028883cTom Kazimiers
Coloc 2: Put accumulation of values from TwinCursor in separate class 
Oct 6 2011
53ac5ec16640Tom Kazimiers
Coloc 2: Use TwinCursor in Manders algorithm 
Oct 6 2011
0bb6ccc39636Tom Kazimiers
Coloc 2: Use TwinCursor in Li's ICQ calculation 
Oct 6 2011
5e2874e9b67aTom Kazimiers
Coloc 2: Add alternative TwinCuror implementation to simplify plugin 
Oct 6 2011
57df00845094Tom Kazimiers
Coloc 2: Be more precise on complaints about y-intercept 
Oct 6 2011
509cf02aa2eaTom Kazimiers
Coloc 2: style fix for correct spelling and comments 
Oct 4 2011
9f00a97de25aJohannes Schindelin
Coloc 2: thresholded Manders really should use the threshold 
Sep 24 2011
81aa43b1860bTom Kazimiers
Coloc 2: Make MetaCursor more robust 
Feb 22 2011
bf3a52efaa9fTom Kazimiers
Coloc 2: Style changes 
Feb 20 2011
776a4153e30dTom Kazimiers
Coloc 2: Don't let all Pearson's calculation fail if threshold fits not all 
Feb 20 2011
d04944bf0d2eTom Kazimiers
Coloc 2: Put statistics calculation in Constes' into own class 
Feb 20 2011
83a53827dd7dTom Kazimiers
Coloc 2: Make Costes more robust, be more fault tolerant 
Feb 20 2011
dd016cccfbe8Tom Kazimiers
Coloc 2: Make Pearsons Algorithm a bit more consistent, use error values 
Feb 20 2011
4689ee59c159Tom Kazimiers
Coloc 2: State number of iterations done on numerical error in Pearsons 
Feb 20 2011
b12eb8e55259Daniel James White/Tom Kazimiers
Coloc 2: Make the data generated by Costes (e.g. P-Valu) accessible through… 
Feb 20 2011
08ad99cbd48dDaniel James White/Tom Kazimiers
Coloc 2: Move our imglib modifications to the right namespace 
Feb 20 2011
e159abb4e0aeTom Kazimiers
Coloc 2: Do some generics argument adding, clean up, code police 
Feb 20 2011
03e4c0b1e934Tom Kazimiers
Coloc 2: For now disable the display of the shuffled date from Costes 
Feb 20 2011
c10ccc3e62c6Tom Kazimiers
Coloc 2: Allow masking in Costes stasitical significance test 
Feb 20 2011
421098ef20ebTom Kazimiers
Coloc 2: In Costes, create OutOfBounds ROICursors through image types 
Feb 20 2011
941711f0d5e7Tom Kazimiers
Coloc 2: Let the ROI cursors in Costes' be implicitely by the image type 
Feb 20 2011
a59a053b7217Tom Kazimiers
Coloc 2: Make package folder names lower case 
Feb 20 2011
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