Diffusion BIOP Run Macro (master) History

ijp-biop-run-macro/algorithms
master642c55aa2288253ebaa08e5…

Jul 4 2012

Mavenize Colocalisation_Analysis
642c55aa2288
·Johannes Schindelin on Jul 4 2012, 02:12.

Jun 26 2012

Coloc 2: fix slightly wrong bin width calculation of histograms
fb9a9741805a
·Tom Kazimiers on Jun 26 2012, 17:05.
Coloc 2: do correct up/down rounding in histogram
804037739951
·Tom Kazimiers on Jun 26 2012, 17:05.
Coloc 2: don't scale histogram intensities up if maximum < bins
32f523e08cb6
·Tom Kazimiers on Jun 26 2012, 17:05.
Coloc 2: reuse single array pixel look-ups during histogram creation
c012a17a59db
·Tom Kazimiers on Jun 26 2012, 17:05.

Jun 20 2012

Coloc 2: get rid of some complier warnings
dd2a88ada7de
·Tom Kazimiers on Jun 20 2012, 12:47.
Coloc 2: fix Imglib2 related compilation issues
f3ddcbb35211
·Tom Kazimiers on Jun 20 2012, 12:47.
Coloc 2: fix Spearman T statistics calculation
5e3a7c9d04af
·Tom Kazimiers on Jun 20 2012, 12:47.
Coloc 2: add alternative Spearman Rank call
8cc14ced4cc7
·Tom Kazimiers on Jun 20 2012, 12:47.
Coloc 2: add override annotation and small style change
4f3cb825fe18
·Leonardo Guizzetti / Tom Kazimiers on Jun 20 2012, 12:47.
Coloc 2: use RandomAccessibleInterval instead of Img
8878ad5cec85
·Tom Kazimiers on Jun 20 2012, 12:47.
Coloc 2: migrate to Imglib2
bb87f31f40b3
·Tom Kazimiers on Jun 20 2012, 12:47.
Coloc 2: Added Spearman Rank Correlation.
747cf201317e
·Leonardo Guizzetti / Tom Kazimiers on Jun 20 2012, 12:47.
Coloc 2: fix typo
2952b8238117
·Tom Kazimiers on Jun 20 2012, 12:47.

Nov 4 2011

Coloc 2: make the threshold regression use a better bisection method
d8e5cb48953a
·Tom Kazimiers on Nov 4 2011, 17:09.
Coloc 2: fix problem with masks having a z-offset that crashed Costes
0bdc57a3b16b
·Tom Kazimiers on Nov 4 2011, 16:04.
Coloc 2: add background subtraction suggestion to warning in auto-threshold
e6cd516c459c
·Tom Kazimiers on Nov 4 2011, 09:42.
Coloc 2: add warnings for auto-threshold if new thr. is above image mean
e402fb9627f9
·Tom Kazimiers on Nov 4 2011, 09:39.

Oct 17 2011

Coloc 2: correctly close the cursor after usage
0a54ae6a95f0
·Tom Kazimiers on Oct 17 2011, 11:12.

Oct 14 2011

Coloc 2: rename ManderCorrelation to MandersColocaization
ea1001d3d856
·Tom Kazimiers on Oct 14 2011, 15:15.

Oct 10 2011

Coloc 2: factor out actual Manders calculation into separate class
5de35927c443
·Tom Kazimiers on Oct 10 2011, 16:06.
Coloc 2: fix bug in Li's ICQ calculation
61d164223efb
·Tom Kazimiers on Oct 10 2011, 15:09.

Oct 8 2011

Coloc 2: fix bug in Costes algorithm that ignored the mask offset
d899ff44b1fe
·Tom Kazimiers on Oct 8 2011, 01:19.
Coloc 2: reword an error message
0e03b8c5e9a3
·Tom Kazimiers on Oct 8 2011, 00:50.

Oct 7 2011

Coloc 2: Reduce dependence between two channels in thresholded Manders
b94896015df0
·Tom Kazimiers on Oct 7 2011, 23:09.
Coloc 2: Add status information to ImageJ GUI
7f4665db2eda
·Tom Kazimiers on Oct 7 2011, 18:15.
Coloc 2: make Costes calculations fit into new architecture
5e085aa58c11
·Tom Kazimiers on Oct 7 2011, 15:19.
Coloc 2: add option to GUI to show shuffled image from Costes calculations
f2ef0b85f9c4
·Tom Kazimiers on Oct 7 2011, 15:15.
Coloc 2: Allow external invocation of Persons calculation with a mask
b9ab8436f5d2
·Tom Kazimiers on Oct 7 2011, 14:54.
Coloc 2: Indicate what kind of mask is used in a cleaner way
8ff136663665
·Tom Kazimiers on Oct 7 2011, 14:44.
Coloc 2: Style fixes and a member name change for readability
15bcc7fd03cd
·Tom Kazimiers on Oct 7 2011, 13:50.
Coloc 2: let input check algorithm use twin curor and mask
1322f8d9eb4b
·Tom Kazimiers on Oct 7 2011, 13:19.
Coloc 2: Use TwinCursor in 2D histogram (scatter plot) and Lis histograms
fda14d986b67
·Tom Kazimiers on Oct 7 2011, 12:01.
Coloc 2: style and spelling fixes
bc47cac09e7a
·Tom Kazimiers on Oct 7 2011, 12:01.
Coloc 2: Fix a not-yet-ported part of auto threshold regression
dfd2db0116b8
·Tom Kazimiers on Oct 7 2011, 12:01.

Oct 6 2011

Coloc 2: Put accumulation of values from TwinCursor in separate class
7281f028883c
·Tom Kazimiers on Oct 6 2011, 11:40.
Coloc 2: Use TwinCursor in Manders algorithm
53ac5ec16640
·Tom Kazimiers on Oct 6 2011, 09:39.
Coloc 2: Use TwinCursor in Li's ICQ calculation
0bb6ccc39636
·Tom Kazimiers on Oct 6 2011, 09:39.
Coloc 2: Add alternative TwinCuror implementation to simplify plugin
5e2874e9b67a
·Tom Kazimiers on Oct 6 2011, 09:39.
Coloc 2: Be more precise on complaints about y-intercept
57df00845094
·Tom Kazimiers on Oct 6 2011, 09:39.

Oct 4 2011

Coloc 2: style fix for correct spelling and comments
509cf02aa2ea
·Tom Kazimiers on Oct 4 2011, 09:50.

Sep 24 2011

Coloc 2: thresholded Manders really should use the threshold
9f00a97de25a
·Johannes Schindelin on Sep 24 2011, 09:14.

Feb 22 2011

Coloc 2: Make MetaCursor more robust
81aa43b1860b
·Tom Kazimiers on Feb 22 2011, 10:49.

Feb 20 2011

Coloc 2: Style changes
bf3a52efaa9f
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Don't let all Pearson's calculation fail if threshold fits not all
776a4153e30d
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Put statistics calculation in Constes' into own class
d04944bf0d2e
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Make Costes more robust, be more fault tolerant
83a53827dd7d
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Make Pearsons Algorithm a bit more consistent, use error values
dd016cccfbe8
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: State number of iterations done on numerical error in Pearsons
4689ee59c159
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Make the data generated by Costes (e.g. P-Valu) accessible through…
b12eb8e55259
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Move our imglib modifications to the right namespace
08ad99cbd48d
·Daniel James White / Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Do some generics argument adding, clean up, code police
e159abb4e0ae
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: For now disable the display of the shuffled date from Costes
03e4c0b1e934
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Allow masking in Costes stasitical significance test
c10ccc3e62c6
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: In Costes, create OutOfBounds ROICursors through image types
421098ef20eb
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Let the ROI cursors in Costes' be implicitely by the image type
941711f0d5e7
·Tom Kazimiers on Feb 20 2011, 22:33.
Coloc 2: Make package folder names lower case
a59a053b7217
·Tom Kazimiers on Feb 20 2011, 22:33.

ijp-biop-run-macro/algorithmsmaster642c55aa2288253ebaa08e5…

Jul 4 2012

Jun 26 2012

Jun 20 2012

Nov 4 2011

Oct 17 2011

Oct 14 2011

Oct 10 2011

Oct 8 2011

Oct 7 2011

Oct 6 2011

Oct 4 2011

Sep 24 2011

Feb 22 2011

Feb 20 2011

ijp-biop-run-macro/algorithms
master642c55aa2288253ebaa08e5…