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CommitAuthorDetailsCommitted
8be1045451c8Johannes Schindelin
Coloc 2: fix flawed bin width calculation 
Feb 11 2014
d74e95eaa8e2Johannes Schindelin
Coloc 2: make it easier to apply interactive test to custom images 
Feb 11 2014
37db684dbfbaJohannes Schindelin
Kendall Tau: avoid integer overflow 
Feb 11 2014
c4ccfcea8d72Johannes Schindelin
Add Kendall Tau to the default methods in the interactive Coloc2 test 
Feb 11 2014
045f6f05cc40chalkie666
send coloc numerical results to IJ.log for scraping batch results 
Feb 9 2014
c7e2d6137192chalkie666
get image names and use them in output 
Feb 9 2014
c2998e967d30chalkie666
bug fix channel names 
Feb 9 2014
2252daa0e0b0chalkie666
fix channel names bug 
Feb 9 2014
a404d37200f8Johannes Schindelin
Kendall-Tau: add an exhaustive test 
Jan 29 2014
2e678fa6501aJohannes Schindelin
Use the fast Kendall Tau-b algorithm instead of the naive one 
Jan 29 2014
a858d5d35bdaJohannes Schindelin
Add an efficient implementation of Kendall's Tau-b 
Jan 29 2014
99a03d970929Johannes Schindelin
Add the IntArraySorter class 
Jan 29 2014
01cbead625dcJohannes Schindelin
Add the reset() method to the PairIterator 
Jan 29 2014
2040ac8faae1Johannes Schindelin
Test more conditions of Kendall's Tau-b 
Jan 29 2014
113c0c8bd919Johannes Schindelin
Add a test for the Kendall Tau-b algorithm 
Jan 29 2014
4857bff46b04Johannes Schindelin
Make the TwinCursor a PairIterator 
Jan 29 2014
16242ac2e343Johannes Schindelin
Use better names than getChannel1 and getChannel2 
Jan 29 2014
4a716dc8ffc1Johannes Schindelin
Add some documentation to the implementation of Kendall's Tau-b 
Jan 29 2014
bfd385030886Johannes Schindelin
Introduce the PairIterator 
Jan 29 2014
b6cdb153456dJohannes Schindelin
Coloc 2: Add Kendall's Tau-b rank correlation 
Jan 29 2014
4691062f7844Johannes Schindelin
Add an easily-called interactive test for Coloc 2 
Jan 29 2014
cc0e3d14b45bCurtis Rueden
POM: simplify repositories blocks 
Jan 17 2014
b12448c1ff84Johannes Schindelin
Remove Eclipse-specific annotation processor settings 
Dec 26 2013
d5c076734a8fJohannes Schindelin
Remove all .factorypath files 
Dec 26 2013
25bd9b68a84eCurtis Rueden
Remove date stamp comments from Eclipse APT config 
Sep 5 2013
91432d5277e3Johannes Schindelin
Specify the version of the iTextPDF dependency in only one place 
Aug 18 2013
61207e537139Johannes Schindelin
Fix mis-merge 
Aug 6 2013
c0d8ca6d7610Johannes Schindelin
Fix versions in pom.xml files 
Aug 2 2013
f09fcbe5f88aJean-Yves Tinevez
Merge remote-tracking branch 'origin/master' into track-mate 
Aug 2 2013
18d95da596f3Johannes Schindelin
Colocalization Analysis (unit tests): do not expect test data to be present 
Jul 24 2013
af40ae019487Johannes Schindelin
Colocalization Analysis (unit tests): move two forgotten classes 
Jul 24 2013
7600141de61fJohannes Schindelin
Move all unit tests into the appropriate src/test/java/ 
Jul 24 2013
f575bdf11c17Johannes Schindelin
Fix scope of all those JUnit dependencies 
Jul 23 2013
e9e15a14ead1Jean-Yves Tinevez
Merge remote-tracking branch 'origin/master' into track-mate 
Jul 9 2013
bbed3f755f82Curtis Rueden
Use fiji.version property for inter-plugin deps 
Jun 14 2013
6bac7a4637d0Curtis Rueden
Use imglib2.version property for imglib2 deps 
Jun 14 2013
ab57f15ff9d5Johannes Schindelin
Use the current sezpoz version in the Eclipse files 
May 27 2013
6d4d343ddddbJohannes Schindelin
Add propert <repositories> sections to all the pom.xml files 
Jan 6 2013
eff40a97638eCurtis Rueden
Fix EOF newlines 
Jul 9 2012
642c55aa2288Johannes Schindelin
Mavenize Colocalisation_Analysis 
Jul 4 2012
0ec4f789caecTom Kazimiers
Coloc 2: fix coordinate display for histogram result hovering 
Jun 26 2012
f63c4513fbc2Tom Kazimiers
Coloc 2: clear ImageJ status when mouse not hovering result image 
Jun 26 2012
fb9a9741805aTom Kazimiers
Coloc 2: fix slightly wrong bin width calculation of histograms 
Jun 26 2012
f29e96eb3935Tom Kazimiers
Coloc 2: refuse work on images with different bit depths 
Jun 26 2012
7cce636be02aTom Kazimiers
Coloc 2: style changes 
Jun 26 2012
e5f5c128e542Tom Kazimiers
Coloc 2: display information on mouse hovering an result histogram 
Jun 26 2012
804037739951Tom Kazimiers
Coloc 2: do correct up/down rounding in histogram 
Jun 26 2012
32f523e08cb6Tom Kazimiers
Coloc 2: don't scale histogram intensities up if maximum < bins 
Jun 26 2012
c012a17a59dbTom Kazimiers
Coloc 2: reuse single array pixel look-ups during histogram creation 
Jun 26 2012
eefdf7159943Tom Kazimiers
Coloc 2: adjust width of results tables automatically 
Jun 26 2012
dd2a88ada7deTom Kazimiers
Coloc 2: get rid of some complier warnings 
Jun 20 2012
f3ddcbb35211Tom Kazimiers
Coloc 2: fix Imglib2 related compilation issues 
Jun 20 2012
cd8abf46137dTom Kazimiers
Coloc 2: fix Spearman T statistics test case 
Jun 20 2012
5e3a7c9d04afTom Kazimiers
Coloc 2: fix Spearman T statistics calculation 
Jun 20 2012
957a501392e7Leonardo Guizzetti/Tom Kazimiers
Coloc 2: fix Spearman Rank unit test 
Jun 20 2012
8cc14ced4cc7Tom Kazimiers
Coloc 2: add alternative Spearman Rank call 
Jun 20 2012
4f3cb825fe18Leonardo Guizzetti/Tom Kazimiers
Coloc 2: add override annotation and small style change 
Jun 20 2012
8878ad5cec85Tom Kazimiers
Coloc 2: use RandomAccessibleInterval instead of Img 
Jun 20 2012
bb87f31f40b3Tom Kazimiers
Coloc 2: migrate to Imglib2 
Jun 20 2012
747cf201317eLeonardo Guizzetti/Tom Kazimiers
Coloc 2: Added Spearman Rank Correlation. 
Jun 20 2012
2952b8238117Tom Kazimiers
Coloc 2: fix typo 
Jun 20 2012
d715c943ec4cTom Kazimiers
Coloc 2: handle unavailable RoiManager gracefully 
Jun 20 2012
59522da063bdTom Kazimiers
Coloc 2: fix small array index bug 
Jun 20 2012
d8e5cb48953aTom Kazimiers
Coloc 2: make the threshold regression use a better bisection method 
Nov 4 2011
0bdc57a3b16bTom Kazimiers
Coloc 2: fix problem with masks having a z-offset that crashed Costes 
Nov 4 2011
e9ddbbdc22edTom Kazimiers
Coloc 2: calculate image statistics with respect to the mask 
Nov 4 2011
e6cd516c459cTom Kazimiers
Coloc 2: add background subtraction suggestion to warning in auto-threshold 
Nov 4 2011
e402fb9627f9Tom Kazimiers
Coloc 2: add warnings for auto-threshold if new thr. is above image mean 
Nov 4 2011
768a9eed1f1cTom Kazimiers
Coloc 2: register result window with IJ window manager 
Nov 4 2011
60fc9232dc9eTom Kazimiers
Coloc 2: style change 
Nov 4 2011
e341071fa67aTom Kazimiers
Coloc 2: better naming of the current result window 
Nov 4 2011
89f876318145eglinger/Tom Kazimiers
Coloc_2: Always tell that we need two open images 
Nov 4 2011
4fdb7473417bTom Kazimiers
Coloc 2: style change 
Oct 21 2011
d658b78e2b96Tom Kazimiers
Coloc 2: get rid of not needed bounding box mask image 
Oct 21 2011
671c86e76facTom Kazimiers
Coloc 2: add forgotten close() calls on cursors in mask factory 
Oct 21 2011
995a3ad00097Tom Kazimiers
Coloc 2: add test case for creation of mask based on lower-dim image 
Oct 21 2011
2908ab9cbd2aTom Kazimiers
Coloc 2: add support for the ROI manager 
Oct 18 2011
3e95cdfb384bTom Kazimiers
Coloc 2: use better assertion statements in Pearson tests 
Oct 17 2011
4d1310359e84Tom Kazimiers
Coloc 2: add test case for unthresholded Pearson's colocalization 
Oct 17 2011
0a54ae6a95f0Tom Kazimiers
Coloc 2: correctly close the cursor after usage 
Oct 17 2011
193f2c0ec151Tom Kazimiers
Coloc 2: use newly made test images comparable to the Manders paper ones 
Oct 17 2011
5945143d8f59Tom Kazimiers
Coloc 2: recreate tests that are given in the Manders paper 
Oct 14 2011
ea1001d3d856Tom Kazimiers
Coloc 2: rename ManderCorrelation to MandersColocaization 
Oct 14 2011
b1ba861f1836Tom Kazimiers
Coloc 2: add another unit test for testing a basic mask creation method 
Oct 10 2011
5de35927c443Tom Kazimiers
Coloc 2: factor out actual Manders calculation into separate class 
Oct 10 2011
7245282e9c63Tom Kazimiers
Coloc 2: style change in test case for Li's ICQ values 
Oct 10 2011
61d164223efbTom Kazimiers
Coloc 2: fix bug in Li's ICQ calculation 
Oct 10 2011
d106d9dcbe3eTom Kazimiers
Coloc 2: style changes 
Oct 10 2011
59096342af66Tom Kazimiers
Coloc 2: add a test that checks for the correctness of a masks content 
Oct 10 2011
82cfb9724abeTom Kazimiers
Coloc 2: add another test case for testing the creation of regular masks 
Oct 10 2011
61ff960adef1Tom Kazimiers
Coloc 2: use the correct data access methods of TwinCursor in mask tests 
Oct 10 2011
b9c9a8b71bf6Tom Kazimiers
Coloc 2: rename a mask test case to refer to the right type of masks 
Oct 10 2011
f83a2adc153bTom Kazimiers
Coloc 2: fix test for creation of regular masks and make it simpler 
Oct 10 2011
238807e72ab7Tom Kazimiers
Coloc 2: add two mask creation helper methods to test cases 
Oct 10 2011
08873e835521Tom Kazimiers
Coloc 2: fix bug that caused created regular masks to be too small 
Oct 10 2011
d899ff44b1feTom Kazimiers
Coloc 2: fix bug in Costes algorithm that ignored the mask offset 
Oct 8 2011
56b1a53f8842Tom Kazimiers
Coloc 2: give out mask offset and size only as cloned arrays 
Oct 8 2011
0e03b8c5e9a3Tom Kazimiers
Coloc 2: reword an error message 
Oct 8 2011
8d655d1b9d2fTom Kazimiers
Coloc 2: Don't show ImugeJ exception dialog on missing pre conditions 
Oct 8 2011
b94896015df0Tom Kazimiers
Coloc 2: Reduce dependence between two channels in thresholded Manders 
Oct 7 2011
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