Homec4science
Diffusion BIOP Run Macro (master) Graph

Graph
master

History Graph

CommitAuthorDetailsCommitted
3e95cdfb384bTom Kazimiers
Coloc 2: use better assertion statements in Pearson tests 
Oct 17 2011
4d1310359e84Tom Kazimiers
Coloc 2: add test case for unthresholded Pearson's colocalization 
Oct 17 2011
0a54ae6a95f0Tom Kazimiers
Coloc 2: correctly close the cursor after usage 
Oct 17 2011
193f2c0ec151Tom Kazimiers
Coloc 2: use newly made test images comparable to the Manders paper ones 
Oct 17 2011
5945143d8f59Tom Kazimiers
Coloc 2: recreate tests that are given in the Manders paper 
Oct 14 2011
ea1001d3d856Tom Kazimiers
Coloc 2: rename ManderCorrelation to MandersColocaization 
Oct 14 2011
b1ba861f1836Tom Kazimiers
Coloc 2: add another unit test for testing a basic mask creation method 
Oct 10 2011
5de35927c443Tom Kazimiers
Coloc 2: factor out actual Manders calculation into separate class 
Oct 10 2011
7245282e9c63Tom Kazimiers
Coloc 2: style change in test case for Li's ICQ values 
Oct 10 2011
61d164223efbTom Kazimiers
Coloc 2: fix bug in Li's ICQ calculation 
Oct 10 2011
d106d9dcbe3eTom Kazimiers
Coloc 2: style changes 
Oct 10 2011
59096342af66Tom Kazimiers
Coloc 2: add a test that checks for the correctness of a masks content 
Oct 10 2011
82cfb9724abeTom Kazimiers
Coloc 2: add another test case for testing the creation of regular masks 
Oct 10 2011
61ff960adef1Tom Kazimiers
Coloc 2: use the correct data access methods of TwinCursor in mask tests 
Oct 10 2011
b9c9a8b71bf6Tom Kazimiers
Coloc 2: rename a mask test case to refer to the right type of masks 
Oct 10 2011
f83a2adc153bTom Kazimiers
Coloc 2: fix test for creation of regular masks and make it simpler 
Oct 10 2011
238807e72ab7Tom Kazimiers
Coloc 2: add two mask creation helper methods to test cases 
Oct 10 2011
08873e835521Tom Kazimiers
Coloc 2: fix bug that caused created regular masks to be too small 
Oct 10 2011
d899ff44b1feTom Kazimiers
Coloc 2: fix bug in Costes algorithm that ignored the mask offset 
Oct 8 2011
56b1a53f8842Tom Kazimiers
Coloc 2: give out mask offset and size only as cloned arrays 
Oct 8 2011
0e03b8c5e9a3Tom Kazimiers
Coloc 2: reword an error message 
Oct 8 2011
8d655d1b9d2fTom Kazimiers
Coloc 2: Don't show ImugeJ exception dialog on missing pre conditions 
Oct 8 2011
b94896015df0Tom Kazimiers
Coloc 2: Reduce dependence between two channels in thresholded Manders 
Oct 7 2011
6d47477d6f4dTom Kazimiers
Coloc 2: ensure valid layout after changing components in SingleWindowDisplay 
Oct 7 2011
d3dc22910736Tom Kazimiers
Coloc 2: Fix bug that prevented auto log display in SingleWindowDisplay 
Oct 7 2011
7f4665db2edaTom Kazimiers
Coloc 2: Add status information to ImageJ GUI 
Oct 7 2011
2e60c6d20c97Tom Kazimiers
Coloc 2: Enable "Show shuffled" checkbox only if Costes is selected 
Oct 7 2011
da6e49ee3d4bTom Kazimiers
Coloc 2: remove all remains of the old architecture 
Oct 7 2011
b8c7aae7db57Tom Kazimiers
Coloc 2: adjust irregular mask test cases 
Oct 7 2011
5e085aa58c11Tom Kazimiers
Coloc 2: make Costes calculations fit into new architecture 
Oct 7 2011
f2ef0b85f9c4Tom Kazimiers
Coloc 2: add option to GUI to show shuffled image from Costes calculations 
Oct 7 2011
b9ab8436f5d2Tom Kazimiers
Coloc 2: Allow external invocation of Persons calculation with a mask 
Oct 7 2011
8ff136663665Tom Kazimiers
Coloc 2: Indicate what kind of mask is used in a cleaner way 
Oct 7 2011
15bcc7fd03cdTom Kazimiers
Coloc 2: Style fixes and a member name change for readability 
Oct 7 2011
1322f8d9eb4bTom Kazimiers
Coloc 2: let input check algorithm use twin curor and mask 
Oct 7 2011
fda14d986b67Tom Kazimiers
Coloc 2: Use TwinCursor in 2D histogram (scatter plot) and Lis histograms 
Oct 7 2011
bc47cac09e7aTom Kazimiers
Coloc 2: style and spelling fixes 
Oct 7 2011
dfd2db0116b8Tom Kazimiers
Coloc 2: Fix a not-yet-ported part of auto threshold regression 
Oct 7 2011
11e85bfb384bTom Kazimiers
Coloc 2: Allow masks with lower dimensionality and in there same extent 
Oct 7 2011
2965d8b55cafTom Kazimiers
Coloc 2: Handle mask offset and size expansion in separate methods 
Oct 7 2011
23fcef2f841cTom Kazimiers
Coloc 2: Allow creation of equal dimensional masks 
Oct 7 2011
34694e758ea7Tom Kazimiers
Coloc 2: style and commit changes 
Oct 7 2011
b2722a7c6e83Tom Kazimiers
Coloc 2: remove TwinValueRangeCursor 
Oct 7 2011
d97ba394f3e6Tom Kazimiers
Coloc 2: Eliminate last use of TwinValueRangeCursor in testing helper 
Oct 6 2011
16b361c847f7Tom Kazimiers
Coloc 2: Make display of masked images in result work with TwinCursor 
Oct 6 2011
b9f88e6ae5b9Tom Kazimiers
Coloc 2: Make TwinCursor a LocalizableCursor 
Oct 6 2011
3c3282af35ffTom Kazimiers
Coloc 2: Add option to display both channels images in result 
Oct 6 2011
7281f028883cTom Kazimiers
Coloc 2: Put accumulation of values from TwinCursor in separate class 
Oct 6 2011
44e1efea528cTom Kazimiers
Coloc 2: use new masking for regular ROIs 
Oct 6 2011
701b613201faTom Kazimiers
Coloc 2: Modify regular ROI test cases to fit new bit-mask implementation 
Oct 6 2011
6c04c92b7bfdTom Kazimiers
Coloc 2: Add argument check for ROI mask creation 
Oct 6 2011
d0c5de3d487dTom Kazimiers
Coloc 2: Add factory method for creating a bit mask from a ROI 
Oct 6 2011
53ac5ec16640Tom Kazimiers
Coloc 2: Use TwinCursor in Manders algorithm 
Oct 6 2011
0bb6ccc39636Tom Kazimiers
Coloc 2: Use TwinCursor in Li's ICQ calculation 
Oct 6 2011
5e2874e9b67aTom Kazimiers
Coloc 2: Add alternative TwinCuror implementation to simplify plugin 
Oct 6 2011
57df00845094Tom Kazimiers
Coloc 2: Be more precise on complaints about y-intercept 
Oct 6 2011
c643f84e8ba5Tom Kazimiers
Coloc 2: replace spaces in dialog items with underscores 
Oct 6 2011
509cf02aa2eaTom Kazimiers
Coloc 2: style fix for correct spelling and comments 
Oct 4 2011
c29bb2456bc3Johannes Schindelin
Coloc 2: style fixes for use of an enum 
Sep 24 2011
b08d4e1b3c4aJohannes Schindelin
Coloc 2: provide the MaskedImage with a LocalizableByDimCursor 
Sep 24 2011
9f00a97de25aJohannes Schindelin
Coloc 2: thresholded Manders really should use the threshold 
Sep 24 2011
05ca8f6539c9Johannes Schindelin
Coloc 2: let the ConstraintCursor tell the caller which predicates succeeded 
Sep 24 2011
1749d88fb096Johannes Schindelin
Coloc 2: make default size of the window bigger 
Sep 24 2011
732a07e889eaJohannes Schindelin
Coloc 2: fix Log toggle 
Sep 24 2011
ecf6ee142ceaJohannes Schindelin
Coloc 2: fix reliance on IJ1 side effect 
Sep 24 2011
2fdedc5b56dbJohannes Schindelin
Use the JImagePanel in Coloc 2 
Sep 24 2011
b3d5466d11faJohannes Schindelin
Simplify code in Coloc 2 
Sep 24 2011
e1179a2f70daJohannes Schindelin
Coloc 2: some cosmetic style fixes 
Sep 24 2011
a11cb495356dJohannes Schindelin
Coloc 2: order some imports 
Sep 24 2011
4c999c5694bbJohannes Schindelin
Coloc 2: fix access permissions and white-space 
Sep 24 2011
3b5853c8fea0Jean-Yves Tinevez
Updated from iText-1.3 to iText-5.5.1 
Aug 9 2011
2e2bffc50f54Daniel James White
Coloc_2 fix compilation with Fiji build system. 
Mar 28 2011
96c0b3a1dcdaTom Kazimiers
Coloc 2: Make all GUI settings except channels and ROIs persistent 
Feb 22 2011
2c712022c2afTom Kazimiers
Coloc 2: Add GUI option to disable pop-up of save-PDF-dialog 
Feb 22 2011
614d610dfed9Tom Kazimiers
Coloc 2: Style changes 
Feb 22 2011
6f4f4ebcd8bcTom Kazimiers
Coloc 2: Add PDF printing button to SingleWindowDisplay 
Feb 22 2011
81aa43b1860bTom Kazimiers
Coloc 2: Make MetaCursor more robust 
Feb 22 2011
2f2b99ce0cfbDaniel James White/Tom Kazimiers
Coloc 2: Track all open SingleWindowDisplays with the help of a static list 
Feb 20 2011
969e0416ee0eDaniel James White/Tom Kazimiers
Coloc 2: Force line width of regression to one 
Feb 20 2011
332c163846e0Daniel James White/Tom Kazimiers
Coloc 2: Reorder readout of GUI and add PSF and nr. of randomisations inputs 
Feb 20 2011
8ef05d5d880fDaniel James White/Tom Kazimiers
Coloc 2: Add two more irregular ROI test cases, similar to regular ones 
Feb 20 2011
aa4e589aeee0Daniel James White/Tom Kazimiers
Coloc 2: Add a black/white rectangular mask creation method for use with tests 
Feb 20 2011
e1db470b2b6bDaniel James White/Tom Kazimiers
Coloc 2: Make MaskCursor able to repeat lower dimensional masks 
Feb 20 2011
b8806b8cb5a2Daniel James White/Tom Kazimiers
Coloc 2: Style changes 
Feb 20 2011
c525e1e78cbcDaniel James White/Tom Kazimiers
Coloc 2: Let the MaskedImage reuse offset and size of RoiImage 
Feb 20 2011
facfb0f10202Daniel James White/Tom Kazimiers
Coloc 2: Add two more regular ROI test cases 
Feb 20 2011
76a5696381bcDaniel James White/Tom Kazimiers
Coloc 2: Fix existing regular ROI test to use "more realistic" ROIs 
Feb 20 2011
520128a17016Daniel James White/Tom Kazimiers
Coloc 2: Fix small bug in RoiImage and rename members for better readability 
Feb 20 2011
a9d4c4f02da9Daniel James White/Tom Kazimiers
Coloc 2: Make Gaussian smoothing optional for simple noise method 
Feb 20 2011
2d0b8b9d5debDaniel James White/Tom Kazimiers
Coloc 2: Add simpler access method for Gaussian smoothing for use in tests 
Feb 20 2011
ad37ffe68378Daniel James White/Tom Kazimiers
Coloc 2: Add helper method for combining imglib images 
Feb 20 2011
8a6cf2bc76efDaniel James White/Tom Kazimiers
Coloc 2: Add a Costes unit test case, similar to one in Costes' paper 
Feb 20 2011
33070f98a04bTom Kazimiers
Coloc 2: Add two helper methods to make images binary 
Feb 20 2011
bf3a52efaa9fTom Kazimiers
Coloc 2: Style changes 
Feb 20 2011
94624b47ae5eTom Kazimiers
Coloc 2: Set Costes' default PSF size to 3 (was 1!) 
Feb 20 2011
776a4153e30dTom Kazimiers
Coloc 2: Don't let all Pearson's calculation fail if threshold fits not all 
Feb 20 2011
23172aa1b6cbTom Kazimiers
Coloc 2: Add Perlin noise generation for test images 
Feb 20 2011
0ecf1fd154dfTom Kazimiers
Coloc 2: Add unit test for statistics class 
Feb 20 2011
d04944bf0d2eTom Kazimiers
Coloc 2: Put statistics calculation in Constes' into own class 
Feb 20 2011
83a53827dd7dTom Kazimiers
Coloc 2: Make Costes more robust, be more fault tolerant 
Feb 20 2011
Prev
1
2
3
Next
c4science · Help